rela (Xenopus tropicalis)
Rel

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00554 (RHD_DNA_bind) IPR011539 XB-GENE-946506 T317871_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Rela
M08039_2.00
Mus musculus
DGGRVTTTCCM

KGGAAABYCCH
ChIP-seq
Chen et al.(2011)
SRP001843_p65_Input_LPSstim
0.766 0.766
Rela
M08038_2.00
Mus musculus
HHYYYCYYNYHYYYNHYYYYCYWNNSYTBY

RVARSNNWRGRRRRDNRRRDRNRRGRRRDD
ChIP-seq
Chen et al.(2011)
SRP001843_p65_Input
0.766 0.766
Rela
M09355_2.00
Mus musculus
KGGRVTTYCCM

KGGRAABYCCM
Misc
Kulakovskiy et al.(2013)
TF65_MOUSE.H11MO.0.A
0.766 0.766
RELA
M02711_2.00
Homo sapiens
SGGRVTTTCC

GGAAABYCCS
SELEX
Mathelier et al.(2014)
MA0107.1
0.737 0.737
RELA
M07999_2.00
Homo sapiens
DGGGRMTTTCCMVN

NBKGGAAAKYCCCH
ChIP-seq
Gerstein et al.(2012)
GM10847_NFKB_Stanford
0.737 0.737
RELA
M08000_2.00
Homo sapiens
NDGGGRMWTTCCHN

NDGGAAWKYCCCHN
ChIP-seq
Gerstein et al.(2012)
GM12878_NFKB_Stanford
0.737 0.737
RELA
M08001_2.00
Homo sapiens
NDGGGRMTTTCCMVN

NBKGGAAAKYCCCHN
ChIP-seq
Gerstein et al.(2012)
GM12891_NFKB_Stanford
0.737 0.737
RELA
M08002_2.00
Homo sapiens
DGGGRHTTTCCMVNN

NNBKGGAAADYCCCH
ChIP-seq
Gerstein et al.(2012)
GM12892_NFKB_Stanford
0.737 0.737
RELA
M08003_2.00
Homo sapiens
DGGGRVTTTCCHVN

NBDGGAAABYCCCH
ChIP-seq
Gerstein et al.(2012)
GM15510_NFKB_Stanford
0.737 0.737
RELA
M08004_2.00
Homo sapiens
NDGGGRMTTTCCMNN

NNKGGAAAKYCCCHN
ChIP-seq
Gerstein et al.(2012)
GM18505_NFKB_Stanford
0.737 0.737
RELA
M08005_2.00
Homo sapiens
NDGGGRHTTTCCMVN

NBKGGAAADYCCCHN
ChIP-seq
Gerstein et al.(2012)
GM18526_NFKB_Stanford
0.737 0.737
RELA
M08006_2.00
Homo sapiens
GGGRVTTTCCM

KGGAAABYCCC
ChIP-seq
Gerstein et al.(2012)
GM18951_NFKB_Stanford
0.737 0.737
RELA
M08007_2.00
Homo sapiens
DGGGRMTTTCCMV

BKGGAAAKYCCCH
ChIP-seq
Gerstein et al.(2012)
GM19099_NFKB_Stanford
0.737 0.737
RELA
M08008_2.00
Homo sapiens
DGGGRMTTTCCMNNN

NNNKGGAAAKYCCCH
ChIP-seq
Gerstein et al.(2012)
GM19193_NFKB_Stanford
0.737 0.737
RELA
M09351_2.00
Homo sapiens
NWGGGRHWTTCCMV

BKGGAAWDYCCCWN
Misc
Kulakovskiy et al.(2013)
TF65_HUMAN.H11MO.0.A
0.737 0.737
RELA
M09626_2.00
Homo sapiens
DGGGRVWTTCCM

KGGAAWBYCCCH
Misc
Heinz et al.(2010)
GM12787-p65_GSE19485
0.737 0.737
RELA
M11237_2.00
Homo sapiens
BGGRVTTTCC

GGAAABYCCV
Transfac
Matys et al.(2006)
V$NFKAPPAB65_01
0.737 0.737
RELA
M11238_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RELA_02
0.737 0.737
RELA
M11239_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RELA_03
0.737 0.737
RELA
M11240_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RELA_04
0.737 0.737
RELA
M11241_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RELA_05
0.737 0.737
RELA
M11242_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RELA_Q6
0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH67968 Rel 25 191

Links

Other Rel family TFs
Other Xenopus tropicalis TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RELA Homo sapiens ENSG00000173039 D 1.000
rela.L Xenopus laevis XB-GENE-946512 I 0.940
ENSCHOG00000004207 Choloepus hoffmanni ENSCHOG00000004207 I 0.868
RELA Tupaia belangeri ENSTBEG00000004751 I 0.868
ENSOPRG00000010827 Ochotona princeps ENSOPRG00000010827 I 0.844
ENSPSIG00000002944 Pelodiscus sinensis ENSPSIG00000002944 I 0.808
Cmyd_10013204 Chelonia mydas Cmyd_10013204 I 0.796
RELA Monodelphis domestica ENSMODG00000009603 I 0.783
Rela Mus musculus ENSMUSG00000024927 D 0.771
RELA Dasypus novemcinctus ENSDNOG00000039743 I 0.771
RELA Sus scrofa ENSSSCG00000012981 I 0.771
RELA Felis catus ENSFCAG00000005696 I 0.766
ENSPANG00000013650 Papio anubis ENSPANG00000013650 I 0.765
RELA Cavia porcellus ENSCPOG00000020593 I 0.765
RELA Pan troglodytes ENSPTRG00000003889 I 0.765
RELA Canis familiaris ENSCAFG00000013334 I 0.765
RELA Bos taurus ENSBTAG00000013895 I 0.765
ENSP00000384273 Macaca fascicularis ENSP00000384273 I 0.765
ENSP00000384273-D1 Bos grunniens ENSP00000384273-D1 I 0.765
ENSAMEG00000017369 Ailuropoda melanoleuca ENSAMEG00000017369 I 0.765
RELA Sorex araneus ENSSARG00000003535 I 0.765
ENSPPYG00000003053 Pongo abelii ENSPPYG00000003053 I 0.765
RELA Macaca mulatta ENSMMUG00000007418 I 0.765
RELA Gorilla gorilla ENSGGOG00000011810 I 0.765
RELA Loxodonta africana ENSLAFG00000021967 I 0.765
RELA Microcebus murinus ENSMICG00000008872 I 0.765
RELA Equus caballus ENSECAG00000013763 I 0.765
ENSCSAG00000007981 Chlorocebus sabaeus ENSCSAG00000007981 I 0.765
ENSNLEG00000005769 Nomascus leucogenys ENSNLEG00000005769 I 0.765
Ogr00666 Ophisaurus gracilis Ogr00666 I 0.760
RELA Callithrix jacchus ENSCJAG00000002037 I 0.759
RELA Tursiops truncatus ENSTTRG00000002311 I 0.759
ENSSTOG00000027336 Ictidomys tridecemlineatus ENSSTOG00000027336 I 0.759
ENSOARG00000017426 Ovis aries ENSOARG00000017426 I 0.759
Rela Rattus norvegicus ENSRNOG00000030888 I 0.759
RELA Pteropus vampyrus ENSPVAG00000009983 I 0.759
Myotis_brandtii_Rela_10030730 Myotis brandtii Myotis_brandtii_Rela_10030730 I 0.753
RELA Myotis lucifugus ENSMLUG00000008727 I 0.753
RELA Otolemur garnettii ENSOGAG00000014117 I 0.753
Pvit_10466 Pogona vitticeps Pvit_10466 I 0.749
ENSMPUG00000011637 Mustela putorius furo ENSMPUG00000011637 I 0.748
Tal_R005550 Tyto alba Tal_R005550 I 0.721
Aan_R015916 Calypte anna Aan_R015916 I 0.721
RELB Tupaia belangeri ENSTBEG00000001763 I 0.714
ENSORLG00000011104 Oryzias latipes ENSORLG00000011104 N 0.711
ENSSHAG00000002714 Sarcophilus harrisii ENSSHAG00000002714 I 0.704