CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
nfkb1
(
Xenopus tropicalis
)
Rel
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00554 (RHD_DNA_bind)
IPR011539
XB-GENE-985746
T317876_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NFKB1
M03448_2.00
Homo sapiens
MGGGGAWTCCCCT
AGGGGAWTCCCCK
SELEX
Jolma et al.(2013)
NFKB1_1
0.811
0.811
NFKB1
M05887_2.00
Homo sapiens
NGGKRNTYYCCCN
NGGGRRANYMCCN
SMiLE-seq
Isakova et al.(2017)
NFKB1
0.811
0.811
NFKB1
M09348_2.00
Homo sapiens
HYTTCCCY
RGGGAARD
Misc
Kulakovskiy et al.(2013)
NFKB1_HUMAN.H11MO.0.A
0.811
0.811
NFKB1
M11228_2.00
Homo sapiens
GGGGATYCCC
GGGRATCCCC
Transfac
Matys et al.(2006)
V$NFKAPPAB50_01
0.811
0.811
NFKB1
M11229_2.00
Homo sapiens
NGGGAHTYYCCM
KGGRRADTCCCN
Transfac
Matys et al.(2006)
V$NFKB_C
0.811
0.811
NFKB1
M11230_2.00
Homo sapiens
DKGGGAMTTYCCNN
NNGGRAAKTCCCMH
Transfac
Matys et al.(2006)
V$NFKB_Q6
0.811
0.811
NFKB1
M11231_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$P50_Q6
0.811
0.811
Nfkb1
M09358_2.00
Mus musculus
GGGRNTTYCCC
GGGRAANYCCC
Misc
Kulakovskiy et al.(2013)
NFKB1_MOUSE.H11MO.0.A
0.805
0.805
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_002934805
Rel
43
238
IEITEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQIKIHNYVGQVKIIVQLITNSKDIRLHAHSLVGKNCEDGICSLTVGPKDTIVGFANLGILHVTKKKVIEILEARMTDAFKKGHNAALLVHPELNYTYSEDRQLNVREKEIIRQAAMQQAKDIDLSVVRLMFTAFLPDSEGRFTRSLEPVVSVPIFDS
Links
Other
Rel
family TFs
Other
Xenopus tropicalis
TFs
56 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy