CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
BGHDH14_bgh05888
(
Blumeria graminis
)
RFX
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02257 (RFX_DNA_binding)
IPR003150
BGHDH14_bgh05888
T318024_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
daf-19
M00709_2.00
Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS
PBM
Narasimhan et al.(2015)
pTH10021
0.654
0.461
RFX1
M00066_2.00
Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN
PBM
Badis et al.(2008)
RFX1_4537
0.653
0.408
RFX1
M07494_2.00
Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1
0.653
0.408
RFX1
M08600_2.00
Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG
Misc
DeBoer et al.(2011)
YLR176C_1478
0.653
0.408
RFX1
M08601_2.00
Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV
Misc
DeBoer et al.(2011)
YLR176C_496
0.653
0.408
RFX1
M11251_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$RFX1_02
0.653
0.408
RFX2
M03454_2.00
Homo sapiens
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV
SELEX
Jolma et al.(2013)
RFX2_1
0.650
0.395
RFX2
M03455_2.00
Homo sapiens
SGTTGCTARGCAACS
SGTTGCYTAGCAACS
SELEX
Jolma et al.(2013)
RFX2_2
0.650
0.395
Rfx2
M03461_2.00
Mus musculus
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV
SELEX
Jolma et al.(2013)
Rfx2_1
0.650
0.395
Rfx2
M03462_2.00
Mus musculus
SGTTGCTARGCAACV
BGTTGCYTAGCAACS
SELEX
Jolma et al.(2013)
Rfx2_2
0.650
0.395
RFX2
M05719_2.00
Homo sapiens
NGTWDYYATRRHWACN
NGTWDYYATRRHWACN
SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX
0.650
0.395
Rfx2
M05888_2.00
Mus musculus
NGTTRCYATGGHDAY
RTHDCCATRGYAACN
SMiLE-seq
Isakova et al.(2017)
RFX2
0.650
0.395
RFX2
M09362_2.00
Homo sapiens
YNGTTGCCATGGVRACVV
BBGTYBCCATGGCAACNR
Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A
0.650
0.395
Rfx2
M09366_2.00
Mus musculus
NBYBGTYNCCMTGGCAACNSSS
SSSNGTTGCCAKGGNRACVRVN
Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A
0.650
0.395
RFX2
M09628_2.00
Homo sapiens
BGTTKCCATGGMAAC
GTTKCCATGGMAACV
Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402
0.650
0.395
RFX2
M05720_2.00
Homo sapiens
BGTTRCCATGRYAACV
BGTTRYCATGGYAACV
SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX
0.650
0.395
For this family, TFs with SR scores >
0.650
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CCU82547
RFX
279
354
MYHYRINQVCSKGKGSVPRGRVYSNYVSRCATERVTVLNPASFGKLVRVLFPGLKTRRLGVRGESKYHYVNFSLAD
Links
Other
RFX
family TFs
Other
Blumeria graminis
TFs
265 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy