CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BGIBMGA007758
(
Bombyx mori
)
RFX
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02257 (RFX_DNA_binding)
IPR003150
BGIBMGA007758
T318025_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Rfx7
M00823_2.00
Mus musculus
GTYRCYRNSB
VSNYRGYRAC
PBM
Weirauch et al.(2013)
pTH3516
0.678
0.480
Rfx7
M00187_2.00
Mus musculus
BGTHDYYRNN
NNYRRHDACV
PBM
Badis et al.(2009)
Rfxdc2_3516
0.678
0.480
RFX7
M05729_2.00
Homo sapiens
BGTTRCYRY
RYRGYAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX
0.678
0.480
RFX7
M05730_2.00
Homo sapiens
BGTTGCYRB
VYRGCAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX
0.678
0.480
RFX5
M03458_2.00
Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV
SELEX
Jolma et al.(2013)
RFX5_1
0.667
0.427
RFX5
M03459_2.00
Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_2
0.667
0.427
RFX5
M03460_2.00
Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_3
0.667
0.427
RFX5
M05725_2.00
Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1
0.667
0.427
RFX5
M05726_2.00
Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2
0.667
0.427
RFX5
M08009_2.00
Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM
ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford
0.667
0.427
RFX5
M08010_2.00
Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH
ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford
0.667
0.427
RFX5
M08011_2.00
Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford
0.667
0.427
RFX5
M08012_2.00
Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR
ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford
0.667
0.427
RFX5
M09364_2.00
Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB
Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A
0.667
0.427
RFX5
M09629_2.00
Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN
Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477
0.667
0.427
RFX5
M11249_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_03
0.667
0.427
RFX5
M11250_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_05
0.667
0.427
RFX5
M05727_2.00
Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1
0.667
0.427
RFX5
M05728_2.00
Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2
0.667
0.427
Rfx
M03959_2.00
Drosophila melanogaster
NGTHRCYATRGYDACN
NGTHRCYATRGYDACN
SELEX
Nitta et al.(2015)
Rfx_1
0.652
0.360
Rfx
M03960_2.00
Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC
SELEX
Nitta et al.(2015)
Rfx_2
0.652
0.360
Rfx
M03961_2.00
Drosophila melanogaster
BGTWRCCATGGYWACV
BGTWRCCATGGYWACV
SELEX
Nitta et al.(2015)
Rfx_3
0.652
0.360
Rfx
M03962_2.00
Drosophila melanogaster
GTTRCYAWTRGYAAC
GTTRCYAWTRGYAAC
SELEX
Nitta et al.(2015)
Rfx_4
0.652
0.360
Rfx
M03963_2.00
Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC
SELEX
Nitta et al.(2015)
Rfx_5
0.652
0.360
daf-19
M00709_2.00
Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS
PBM
Narasimhan et al.(2015)
pTH10021
0.652
0.373
Sjc_0102030
M02455_2.00
Schistosoma japonicum
GTTRCYANG
CNTRGYAAC
PBM
Weirauch et al.(2014)
pTH9285
0.651
0.373
RFX1
M02447_2.00
Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC
PBM
Weirauch et al.(2014)
pTH9223
0.651
0.373
RFX1
M02451_2.00
Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC
PBM
Weirauch et al.(2014)
pTH9385
0.651
0.373
RFX1
M05723_2.00
Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV
SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX
0.651
0.373
Rfx1
M08162_2.00
Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC
ChIP-seq
Mathelier et al.(2014)
MA0509.1
0.651
0.373
RFX1
M09363_2.00
Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B
0.651
0.373
Rfx1
M09367_2.00
Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A
0.651
0.373
RFX1
M11245_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EFC_Q6
0.651
0.373
RFX1
M11246_2.00
Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_01
0.651
0.373
RFX1
M11247_2.00
Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_02
0.651
0.373
RFX1
M11248_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX1_Q6
0.651
0.373
RFX1
M05724_2.00
Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX
0.651
0.373
G4VLF2_SCHMA
M02452_2.00
Schistosoma mansoni
GTTGCTAD
HTAGCAAC
PBM
Weirauch et al.(2014)
pTH8587
0.651
0.373
For this family, TFs with SR scores >
0.650
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGIBMGA007758-TA
RFX
147
221
LKQTVTWIQTHLEVDPDVSLPKQDVYDEYIAHCMSSNMKPLSTADFGKVMKQVYPSVRPRRLGTRGNSRCEVRKY
Links
Other
RFX
family TFs
Other
Bombyx mori
TFs
341 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy