TF Information

BGIBMGA007758 *(Bombyx mori)* RFX
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02257 (RFX_DNA_binding)	IPR003150	BGIBMGA007758	T318025_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Rfx7 M00823_2.00	Mus musculus	GTYRCYRNSB	VSNYRGYRAC	PBM Weirauch et al.(2013) pTH3516	0.678	0.480
Rfx7 M00187_2.00	Mus musculus	BGTHDYYRNN	NNYRRHDACV	PBM Badis et al.(2009) Rfxdc2_3516	0.678	0.480
RFX7 M05729_2.00	Homo sapiens	BGTTRCYRY	RYRGYAACV	SELEX Yin et al.(2017) RFX7_eDBD_HT-SELEX	0.678	0.480
RFX7 M05730_2.00	Homo sapiens	BGTTGCYRB	VYRGCAACV	SELEX Yin et al.(2017) RFX7_eDBD_Methyl-HT-SELEX	0.678	0.480
RFX5 M03458_2.00	Homo sapiens	BGTTRCYATRGYAACV	BGTTRCYATRGYAACV	SELEX Jolma et al.(2013) RFX5_1	0.667	0.427
RFX5 M03459_2.00	Homo sapiens	BGTTGCYATGGYAACV	BGTTRCCATRGCAACV	SELEX Jolma et al.(2013) RFX5_2	0.667	0.427
RFX5 M03460_2.00	Homo sapiens	BGTTGCYATGGYAACV	BGTTRCCATRGCAACV	SELEX Jolma et al.(2013) RFX5_3	0.667	0.427
RFX5 M05725_2.00	Homo sapiens	BGTTRCYANGBGTTGCYRN	NYRGCAACVCNTRGYAACV	SELEX Yin et al.(2017) RFX5_eDBD_HT-SELEX_1	0.667	0.427
RFX5 M05726_2.00	Homo sapiens	NYRVYAACSGTTRCYAN	NTRGYAACSGTTRBYRN	SELEX Yin et al.(2017) RFX5_eDBD_HT-SELEX_2	0.667	0.427
RFX5 M08009_2.00	Homo sapiens	KCRBYDGTTRCYRRG	CYYRGYAACHRVYGM	ChIP-seq Gerstein et al.(2012) GM12878_RFX5_Stanford	0.667	0.427
RFX5 M08010_2.00	Homo sapiens	DBVBYDGTTGCYRGGBVRR	YYBVCCYRGCAACHRVBVH	ChIP-seq Gerstein et al.(2012) H1-hESC_RFX5_Stanford	0.667	0.427
RFX5 M08011_2.00	Homo sapiens	TCVBYDGTTDCYRDG	CHYRGHAACHRVBGA	ChIP-seq Gerstein et al.(2012) HeLa-S3_RFX5_Stanford	0.667	0.427
RFX5 M08012_2.00	Homo sapiens	YDGTTRCYRKGBVRV	BYBVCMYRGYAACHR	ChIP-seq Gerstein et al.(2012) HepG2_RFX5_Stanford	0.667	0.427
RFX5 M09364_2.00	Homo sapiens	VNNVBYDGTTGCYRKGNVRV	BYBNCMYRGCAACHRVBNNB	Misc Kulakovskiy et al.(2013) RFX5_HUMAN.H11MO.0.A	0.667	0.427
RFX5 M09629_2.00	Homo sapiens	NDGTTRCYADGV	BCHTRGYAACHN	Misc Heinz et al.(2010) GM12878-Rfx5_GSE31477	0.667	0.427
RFX5 M11249_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RFX5_03	0.667	0.427
RFX5 M11250_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RFX5_05	0.667	0.427
RFX5 M05727_2.00	Homo sapiens	BGTYRYYRNGBGTTGYYRN	NYRRCAACVCNYRRYRACV	SELEX Yin et al.(2017) RFX5_eDBD_Methyl-HT-SELEX_1	0.667	0.427
RFX5 M05728_2.00	Homo sapiens	NTRGYAASSGTYRBYRN	NYRVYRACSSTTRCYAN	SELEX Yin et al.(2017) RFX5_eDBD_Methyl-HT-SELEX_2	0.667	0.427
Rfx M03959_2.00	Drosophila melanogaster	NGTHRCYATRGYDACN	NGTHRCYATRGYDACN	SELEX Nitta et al.(2015) Rfx_1	0.652	0.360
Rfx M03960_2.00	Drosophila melanogaster	GTTGCTARGCAAC	GTTGCYTAGCAAC	SELEX Nitta et al.(2015) Rfx_2	0.652	0.360
Rfx M03961_2.00	Drosophila melanogaster	BGTWRCCATGGYWACV	BGTWRCCATGGYWACV	SELEX Nitta et al.(2015) Rfx_3	0.652	0.360
Rfx M03962_2.00	Drosophila melanogaster	GTTRCYAWTRGYAAC	GTTRCYAWTRGYAAC	SELEX Nitta et al.(2015) Rfx_4	0.652	0.360
Rfx M03963_2.00	Drosophila melanogaster	GTTGCTARGCAAC	GTTGCYTAGCAAC	SELEX Nitta et al.(2015) Rfx_5	0.652	0.360
daf-19 M00709_2.00	Caenorhabditis elegans	SGTTRCTADG	CHTAGYAACS	PBM Narasimhan et al.(2015) pTH10021	0.652	0.373
Sjc_0102030 M02455_2.00	Schistosoma japonicum	GTTRCYANG	CNTRGYAAC	PBM Weirauch et al.(2014) pTH9285	0.651	0.373
RFX1 M02447_2.00	Anolis carolinensis	GTHRCYANGN	NCNTRGYDAC	PBM Weirauch et al.(2014) pTH9223	0.651	0.373
RFX1 M02451_2.00	Tetraodon nigroviridis	GTHDYYANGN	NCNTRRHDAC	PBM Weirauch et al.(2014) pTH9385	0.651	0.373
RFX1 M05723_2.00	Homo sapiens	BGTTRYCATGRYAACV	BGTTRYCATGRYAACV	SELEX Yin et al.(2017) RFX1_eDBD_HT-SELEX	0.651	0.373
Rfx1 M08162_2.00	Mus musculus	GTTGCYADGGNRAC	GTYNCCHTRGCAAC	ChIP-seq Mathelier et al.(2014) MA0509.1	0.651	0.373
RFX1 M09363_2.00	Homo sapiens	BBBSSNGTTGCCADGGNRMCVV	BBGKYNCCHTGGCAACNSSVVV	Misc Kulakovskiy et al.(2013) RFX1_HUMAN.H11MO.0.B	0.651	0.373
Rfx1 M09367_2.00	Mus musculus	BBBSSNGTTGCCADGGNRMCVV	BBGKYNCCHTGGCAACNSSVVV	Misc Kulakovskiy et al.(2013) RFX1_MOUSE.H11MO.0.A	0.651	0.373
RFX1 M11245_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$EFC_Q6	0.651	0.373
RFX1 M11246_2.00	Homo sapiens	HNGTTRCYWVGYDMYNN	NNRKHRCBWRGYAACND	Transfac Matys et al.(2006) V$RFX1_01	0.651	0.373
RFX1 M11247_2.00	Homo sapiens	HNGTTRCYWBVGYDMYNN	NNRKHRCBVWRGYAACND	Transfac Matys et al.(2006) V$RFX1_02	0.651	0.373
RFX1 M11248_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RFX1_Q6	0.651	0.373
RFX1 M05724_2.00	Homo sapiens	BGTWRYCATGRYWACV	BGTWRYCATGRYWACV	SELEX Yin et al.(2017) RFX1_eDBD_Methyl-HT-SELEX	0.651	0.373
G4VLF2_SCHMA M02452_2.00	Schistosoma mansoni	GTTGCTAD	HTAGCAAC	PBM Weirauch et al.(2014) pTH8587	0.651	0.373
For this family, TFs with SR scores > 0.650* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
BGIBMGA007758-TA	RFX	147	221	LKQTVTWIQTHLEVDPDVSLPKQDVYDEYIAHCMSSNMKPLSTADFGKVMKQVYPSVRPRRLGTRGNSRCEVRKY

Links
Other RFX family TFs
Other *Bombyx mori* TFs

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341 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action

BGIBMGA007758 (Bombyx mori) RFX

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

341 Related TFs

Invalid Input OrderBy

BGIBMGA007758 **(Bombyx mori)
RFX**