CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ANIA_02296
(
Aspergillus nidulans
)
RFX
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02257 (RFX_DNA_binding)
IPR003150
CADANIAG00008989
T318037_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RFX1
M00066_2.00
Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN
PBM
Badis et al.(2008)
RFX1_4537
0.675
0.449
RFX1
M07494_2.00
Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1
0.675
0.449
RFX1
M08600_2.00
Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG
Misc
DeBoer et al.(2011)
YLR176C_1478
0.675
0.449
RFX1
M08601_2.00
Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV
Misc
DeBoer et al.(2011)
YLR176C_496
0.675
0.449
RFX1
M11251_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$RFX1_02
0.675
0.449
daf-19
M00709_2.00
Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS
PBM
Narasimhan et al.(2015)
pTH10021
0.653
0.423
XP_002157607.1
M02456_2.00
Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC
PBM
Weirauch et al.(2014)
pTH9199
0.653
0.397
GB41876
M02453_2.00
Apis mellifera
GTHDCYANVN
NBNTRGHDAC
PBM
Weirauch et al.(2014)
pTH9226
0.652
0.397
Rfx3
M00188_2.00
Mus musculus
SNTRRHDACN
NGTHDYYANS
PBM
Badis et al.(2009)
Rfx3_3961
0.652
0.397
Rfx3
M03463_2.00
Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS
SELEX
Jolma et al.(2013)
Rfx3_1
0.652
0.397
Rfx3
M09368_2.00
Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV
Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C
0.652
0.397
G4VLF2_SCHMA
M02452_2.00
Schistosoma mansoni
GTTGCTAD
HTAGCAAC
PBM
Weirauch et al.(2014)
pTH8587
0.651
0.385
Sjc_0102030
M02455_2.00
Schistosoma japonicum
GTTRCYANG
CNTRGYAAC
PBM
Weirauch et al.(2014)
pTH9285
0.651
0.385
For this family, TFs with SR scores >
0.650
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADANIAP00008989
RFX
240
317
QVFAMIWLKENCRKSTGSVRRDRVYCCYAEKCGTERVSVLNPASFGKLVRIIFPNVQTRRLGVRGESKYHYVDLTVIE
Links
Other
RFX
family TFs
Other
Aspergillus nidulans
TFs
351 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy