CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NFIA_036980
(
Neosartorya fischeri
)
RFX
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02257 (RFX_DNA_binding)
IPR003150
CADNFIAG00003299
T318040_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RFX1
M00066_2.00
Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN
PBM
Badis et al.(2008)
RFX1_4537
0.675
0.449
RFX1
M07494_2.00
Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1
0.675
0.449
RFX1
M08600_2.00
Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG
Misc
DeBoer et al.(2011)
YLR176C_1478
0.675
0.449
RFX1
M08601_2.00
Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV
Misc
DeBoer et al.(2011)
YLR176C_496
0.675
0.449
RFX1
M11251_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$RFX1_02
0.675
0.449
daf-19
M00709_2.00
Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS
PBM
Narasimhan et al.(2015)
pTH10021
0.654
0.423
XP_002157607.1
M02456_2.00
Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC
PBM
Weirauch et al.(2014)
pTH9199
0.653
0.397
GB41876
M02453_2.00
Apis mellifera
GTHDCYANVN
NBNTRGHDAC
PBM
Weirauch et al.(2014)
pTH9226
0.653
0.397
Rfx3
M00188_2.00
Mus musculus
SNTRRHDACN
NGTHDYYANS
PBM
Badis et al.(2009)
Rfx3_3961
0.652
0.397
Rfx3
M03463_2.00
Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS
SELEX
Jolma et al.(2013)
Rfx3_1
0.652
0.397
Rfx3
M09368_2.00
Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV
Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C
0.652
0.397
G4VLF2_SCHMA
M02452_2.00
Schistosoma mansoni
GTTGCTAD
HTAGCAAC
PBM
Weirauch et al.(2014)
pTH8587
0.651
0.385
Sjc_0102030
M02455_2.00
Schistosoma japonicum
GTTRCYANG
CNTRGYAAC
PBM
Weirauch et al.(2014)
pTH9285
0.651
0.385
RFX1
M02447_2.00
Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC
PBM
Weirauch et al.(2014)
pTH9223
0.650
0.397
RFX1
M02451_2.00
Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC
PBM
Weirauch et al.(2014)
pTH9385
0.650
0.397
RFX1
M05723_2.00
Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV
SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX
0.650
0.397
Rfx1
M08162_2.00
Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC
ChIP-seq
Mathelier et al.(2014)
MA0509.1
0.650
0.397
RFX1
M09363_2.00
Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B
0.650
0.397
Rfx1
M09367_2.00
Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A
0.650
0.397
RFX1
M11245_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EFC_Q6
0.650
0.397
RFX1
M11246_2.00
Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_01
0.650
0.397
RFX1
M11247_2.00
Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_02
0.650
0.397
RFX1
M11248_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX1_Q6
0.650
0.397
RFX1
M05724_2.00
Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX
0.650
0.397
RFX2
M02449_2.00
Homo sapiens
BGTHRYYADG
CHTRRYDACV
PBM
Weirauch et al.(2014)
pTH9194
0.650
0.372
RFX2
M02450_2.00
Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN
PBM
Weirauch et al.(2014)
pTH9269
0.650
0.372
RFX3
M03452_2.00
Homo sapiens
NGTTRCCATGGHAACV
BGTTDCCATGGYAACN
SELEX
Jolma et al.(2013)
RFX3_1
0.650
0.397
RFX3
M03453_2.00
Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV
SELEX
Jolma et al.(2013)
RFX3_2
0.650
0.397
RFX3
M02750_2.00
Homo sapiens
GTTRYYATGG
CCATRRYAAC
SELEX
Jolma et al.(2010)
RFX3_dimer
0.650
0.397
RFX3
M05715_2.00
Homo sapiens
NGTTRYYATRRYAACN
NGTTRYYATRRYAACN
SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1
0.650
0.397
RFX3
M05716_2.00
Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2
0.650
0.397
RFX3
M09361_2.00
Homo sapiens
BGTTRCCATGGYRN
NYRCCATGGYAACV
Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B
0.650
0.397
RFX3
M09627_2.00
Homo sapiens
BNGTTGCCATGGCAAC
GTTGCCATGGCAACNV
Misc
Heinz et al.(2010)
K562-RFX3_SRA012198
0.650
0.397
RFX3
M05717_2.00
Homo sapiens
BGTTRYYATRRYAACV
BGTTRYYATRRYAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1
0.650
0.397
RFX3
M05718_2.00
Homo sapiens
BGTTGCTARGCAACV
BGTTGCYTAGCAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2
0.650
0.397
For this family, TFs with SR scores >
0.650
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADNFIAP00003210
RFX
208
285
QVFAMIWLKENCRKSSGSVRRDRVYCCYAEKCGTERVSVLNPASFGKLVRIIFPNVQTRRLGVRGESKYHYVDLTVIE
Links
Other
RFX
family TFs
Other
Neosartorya fischeri
TFs
457 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy