CAGL0B04895g (Candida glabrata)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 CAGL0B04895g T318041_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RFX1
M00066_2.00
Saccharomyces cerevisiae
NSGTTGCYAN

NTRGCAACSN
PBM
Badis et al.(2008)
RFX1_4537
0.729 0.684
RFX1
M07494_2.00
Saccharomyces cerevisiae
BGTTRCYA

TRGYAACV
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1
0.729 0.684
RFX1
M08600_2.00
Saccharomyces cerevisiae
CGTYRBYAYRGYWACM

KGTWRCYRTRVYRACG
Misc
DeBoer et al.(2011)
YLR176C_1478
0.729 0.684
RFX1
M08601_2.00
Saccharomyces cerevisiae
BGTTRCYA

TRGYAACV
Misc
DeBoer et al.(2011)
YLR176C_496
0.729 0.684
RFX1
M11251_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$RFX1_02
0.729 0.684
RFX2
M02449_2.00
Homo sapiens
BGTHRYYADG

CHTRRYDACV
PBM
Weirauch et al.(2014)
pTH9194
0.655 0.430
RFX2
M02450_2.00
Ornithorhynchus anatinus
NGTHRYYANV

BNTRRYDACN
PBM
Weirauch et al.(2014)
pTH9269
0.655 0.430
Rfx2
M03461_2.00
Mus musculus
BGTTRCCATGGYAACV

BGTTRCCATGGYAACV
SELEX
Jolma et al.(2013)
Rfx2_1
0.655 0.430
Rfx2
M03462_2.00
Mus musculus
SGTTGCTARGCAACV

BGTTGCYTAGCAACS
SELEX
Jolma et al.(2013)
Rfx2_2
0.655 0.430
Rfx2
M05888_2.00
Mus musculus
NGTTRCYATGGHDAY

RTHDCCATRGYAACN
SMiLE-seq
Isakova et al.(2017)
RFX2
0.655 0.430
Rfx2
M09366_2.00
Mus musculus
NBYBGTYNCCMTGGCAACNSSS

SSSNGTTGCCAKGGNRACVRVN
Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A
0.655 0.430
Rfx3
M00188_2.00
Mus musculus
SNTRRHDACN

NGTHDYYANS
PBM
Badis et al.(2009)
Rfx3_3961
0.654 0.430
Rfx3
M03463_2.00
Mus musculus
SGTTRCCATGGYAACS

SGTTRCCATGGYAACS
SELEX
Jolma et al.(2013)
Rfx3_1
0.654 0.430
Rfx3
M09368_2.00
Mus musculus
BBGTTGCCATGGNRAC

GTYNCCATGGCAACVV
Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C
0.654 0.430
Rfx
M03959_2.00
Drosophila melanogaster
NGTHRCYATRGYDACN

NGTHRCYATRGYDACN
SELEX
Nitta et al.(2015)
Rfx_1
0.654 0.418
Rfx
M03960_2.00
Drosophila melanogaster
GTTGCTARGCAAC

GTTGCYTAGCAAC
SELEX
Nitta et al.(2015)
Rfx_2
0.654 0.418
Rfx
M03961_2.00
Drosophila melanogaster
BGTWRCCATGGYWACV

BGTWRCCATGGYWACV
SELEX
Nitta et al.(2015)
Rfx_3
0.654 0.418
Rfx
M03962_2.00
Drosophila melanogaster
GTTRCYAWTRGYAAC

GTTRCYAWTRGYAAC
SELEX
Nitta et al.(2015)
Rfx_4
0.654 0.418
Rfx
M03963_2.00
Drosophila melanogaster
GTTGCTARGCAAC

GTTGCYTAGCAAC
SELEX
Nitta et al.(2015)
Rfx_5
0.654 0.418
GB41876
M02453_2.00
Apis mellifera
GTHDCYANVN

NBNTRGHDAC
PBM
Weirauch et al.(2014)
pTH9226
0.654 0.418
XP_002157607.1
M02456_2.00
Hydra magnipapillata
GTHDYYDNVN

NBNHRRHDAC
PBM
Weirauch et al.(2014)
pTH9199
0.654 0.392
RFX2
M03454_2.00
Homo sapiens
BGTTRCCATGGYAACV

BGTTRCCATGGYAACV
SELEX
Jolma et al.(2013)
RFX2_1
0.653 0.430
RFX2
M03455_2.00
Homo sapiens
SGTTGCTARGCAACS

SGTTGCYTAGCAACS
SELEX
Jolma et al.(2013)
RFX2_2
0.653 0.430
RFX2
M05719_2.00
Homo sapiens
NGTWDYYATRRHWACN

NGTWDYYATRRHWACN
SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX
0.653 0.430
RFX2
M09362_2.00
Homo sapiens
YNGTTGCCATGGVRACVV

BBGTYBCCATGGCAACNR
Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A
0.653 0.430
RFX2
M09628_2.00
Homo sapiens
BGTTKCCATGGMAAC

GTTKCCATGGMAACV
Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402
0.653 0.430
RFX2
M05720_2.00
Homo sapiens
BGTTRCCATGRYAACV

BGTTRYCATGGYAACV
SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX
0.653 0.430
RFX1
M02447_2.00
Anolis carolinensis
GTHRCYANGN

NCNTRGYDAC
PBM
Weirauch et al.(2014)
pTH9223
0.653 0.418
RFX1
M02451_2.00
Tetraodon nigroviridis
GTHDYYANGN

NCNTRRHDAC
PBM
Weirauch et al.(2014)
pTH9385
0.653 0.418
RFX1
M05723_2.00
Homo sapiens
BGTTRYCATGRYAACV

BGTTRYCATGRYAACV
SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX
0.653 0.418
Rfx1
M08162_2.00
Mus musculus
GTTGCYADGGNRAC

GTYNCCHTRGCAAC
ChIP-seq
Mathelier et al.(2014)
MA0509.1
0.653 0.418
RFX1
M09363_2.00
Homo sapiens
BBBSSNGTTGCCADGGNRMCVV

BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B
0.653 0.418
Rfx1
M09367_2.00
Mus musculus
BBBSSNGTTGCCADGGNRMCVV

BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A
0.653 0.418
RFX1
M11245_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EFC_Q6
0.653 0.418
RFX1
M11246_2.00
Homo sapiens
HNGTTRCYWVGYDMYNN

NNRKHRCBWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_01
0.653 0.418
RFX1
M11247_2.00
Homo sapiens
HNGTTRCYWBVGYDMYNN

NNRKHRCBVWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_02
0.653 0.418
RFX1
M11248_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX1_Q6
0.653 0.418
RFX1
M05724_2.00
Homo sapiens
BGTWRYCATGRYWACV

BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX
0.653 0.418
RFX3
M03452_2.00
Homo sapiens
NGTTRCCATGGHAACV

BGTTDCCATGGYAACN
SELEX
Jolma et al.(2013)
RFX3_1
0.653 0.430
RFX3
M03453_2.00
Homo sapiens
BGTTGCTARGCAACS

SGTTGCYTAGCAACV
SELEX
Jolma et al.(2013)
RFX3_2
0.653 0.430
RFX3
M02750_2.00
Homo sapiens
GTTRYYATGG

CCATRRYAAC
SELEX
Jolma et al.(2010)
RFX3_dimer
0.653 0.430
RFX3
M05715_2.00
Homo sapiens
NGTTRYYATRRYAACN

NGTTRYYATRRYAACN
SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1
0.653 0.430
RFX3
M05716_2.00
Homo sapiens
BGTTGCTARGCAACS

SGTTGCYTAGCAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2
0.653 0.430
RFX3
M09361_2.00
Homo sapiens
BGTTRCCATGGYRN

NYRCCATGGYAACV
Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B
0.653 0.430
RFX3
M09627_2.00
Homo sapiens
BNGTTGCCATGGCAAC

GTTGCCATGGCAACNV
Misc
Heinz et al.(2010)
K562-RFX3_SRA012198
0.653 0.430
RFX3
M05717_2.00
Homo sapiens
BGTTRYYATRRYAACV

BGTTRYYATRRYAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1
0.653 0.430
RFX3
M05718_2.00
Homo sapiens
BGTTGCTARGCAACV

BGTTGCYTAGCAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2
0.653 0.430
Sjc_0102030
M02455_2.00
Schistosoma japonicum
GTTRCYANG

CNTRGYAAC
PBM
Weirauch et al.(2014)
pTH9285
0.652 0.392
G4VLF2_SCHMA
M02452_2.00
Schistosoma mansoni
GTTGCTAD

HTAGCAAC
PBM
Weirauch et al.(2014)
pTH8587
0.652 0.392
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CAG58083 RFX 152 231

Links

Other RFX family TFs
Other Candida glabrata TFs

544 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
L798_10924 Zootermopsis nevadensis L798_10924 I 0.000
L798_10928 Zootermopsis nevadensis L798_10928 I 0.000
PPAI000981 Phlebotomus papatasi PPAI000981 N 0.000
AARA003420 Anopheles arabiensis AARA003420 N 0.000
AALB009972 Anopheles albimanus AALB009972 N 0.000
LDEC015408 Leptinotarsa decemlineata LDEC015408 N 0.000
LDEC006636 Leptinotarsa decemlineata LDEC006636 N 0.000
LDEC006635 Leptinotarsa decemlineata LDEC006635 N 0.000
HHAL003217-PA Halyomorpha halys HHAL003217-PA N 0.000
CLEC002262 Cimex lectularius CLEC002262 N 0.000
CLEC002260 Cimex lectularius CLEC002260 N 0.000
Hsal_08385--XP_001120327.1_APIME Harpegnathos saltator Hsal_08385--XP_001120327.1_APIME N 0.000
Hsal_08372--XP_393312.1_APIME Harpegnathos saltator Hsal_08372--XP_393312.1_APIME N 0.000
Cflo_12495--XP_001120327.1_APIME Camponotus floridanus Cflo_12495--XP_001120327.1_APIME N 0.000
AATE003836 Anopheles atroparvus AATE003836 N 0.000
ACHR005166 Anopheles christyi ACHR005166 N 0.000
LLOJ009833 Lutzomyia longipalpis LLOJ009833 N 0.000
LLOJ005066 Lutzomyia longipalpis LLOJ005066 N 0.000
ASTEI02368 Anopheles stephensi ASTEI02368 N 0.000
AQUA002997 Anopheles quadriannulatus AQUA002997 N 0.000
AMIN009356 Anopheles minimus AMIN009356 N 0.000
AMEM007635 Anopheles merus AMEM007635 N 0.000
AMEC021898 Anopheles melas AMEC021898 N 0.000
AMAM003031 Anopheles maculatus AMAM003031 N 0.000
AFUN009606 Anopheles funestus AFUN009606 N 0.000
AFAF001212 Anopheles farauti AFAF001212 N 0.000
ADIR000502 Anopheles dirus ADIR000502 N 0.000
ACUA018116 Anopheles culicifacies ACUA018116 N 0.000
ACOM026226 Anopheles coluzzii ACOM026226 N 0.000
Cflo_09321--XP_393312.1_APIME Camponotus floridanus Cflo_09321--XP_393312.1_APIME N 0.000
Cflo_06471--XP_001120327.1_APIME Camponotus floridanus Cflo_06471--XP_001120327.1_APIME N 0.000
YQE_12733 Dendroctonus ponderosae YQE_12733 N 0.000
DAPPUDRAFT_64307 Daphnia pulex DAPPUDRAFT_64307 N 0.000
DAPPUDRAFT_299514 Daphnia pulex DAPPUDRAFT_299514 N 0.000
CPIJ003409 Culex quinquefasciatus CPIJ003409 N 0.000
BGIBMGA008965 Bombyx mori BGIBMGA008965 N 0.000
BGIBMGA008915 Bombyx mori BGIBMGA008915 N 0.000
AGAP012342 Anopheles gambiae AGAP012342 N 0.000
ADAC001260 Anopheles darlingi ADAC001260 N 0.000
ACYPI003697 Acyrthosiphon pisum ACYPI003697 N 0.000
ACEP15330 Atta cephalotes ACEP15330 N 0.000
ACEP15314 Atta cephalotes ACEP15314 N 0.000
ACEP15313 Atta cephalotes ACEP15313 N 0.000
AAEL004097 Aedes aegypti AAEL004097 N 0.000
GB43778 Apis mellifera GB43778 N 0.000
GB43788 Apis mellifera GB43788 N 0.000
YQE_12730 Dendroctonus ponderosae YQE_12730 N 0.000
TC006580 Tribolium castaneum TC006580 N 0.000
TC005541 Tribolium castaneum TC005541 N 0.000
SINV15898 Solenopsis invicta SINV15898 N 0.000
SINV15880 Solenopsis invicta SINV15880 N 0.000
RPRC006229 Rhodnius prolixus RPRC006229 N 0.000
PHUM375930 Pediculus humanus PHUM375930 N 0.000
PHUM375920 Pediculus humanus PHUM375920 N 0.000
KGM_14329 Danaus plexippus KGM_14329 N 0.000
KGM_04455 Danaus plexippus KGM_04455 N 0.000
HMEL013921 Heliconius melpomene HMEL013921 N 0.000
HMEL008302 Heliconius melpomene HMEL008302 N 0.000
CpipJ_CPIJ003409 Culex pipiens CpipJ_CPIJ003409 N 0.000