ENSAPLG00000002900 (Anas platyrhynchos)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSAPLG00000002900 T318136_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.685 0.397
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.685 0.397
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.685 0.397
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.685 0.397
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.685 0.397
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.685 0.397
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.685 0.397
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.685 0.397
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.685 0.397
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.685 0.397
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.685 0.397
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.685 0.397
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.685 0.397
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.685 0.397
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.685 0.397
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.673 0.370
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.673 0.370
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.673 0.370
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.673 0.370
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAPLP00000002340 RFX 40 120

Links

Other RFX family TFs
Other Anas platyrhynchos TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R010941 Calypte anna Aan_R010941 I 0.708
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.707
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.705
RFX5 Gallus gallus ENSGALG00000000836 I 0.705
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.704
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.702
RFX5 Procavia capensis ENSPCAG00000011056 I 0.701
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.701
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.700
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.700
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.700
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.696
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.696
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.696
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.694
RFX5 Homo sapiens ENSG00000143390 D 0.692
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.691
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.690
Rfx5 Mus musculus ENSMUSG00000005774 I 0.690
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.689
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.689
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.689
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.688
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.688
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.688
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.688
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.687
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.686
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.686
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.686
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.685
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.685
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.685
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.685
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.685
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.685
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.685
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.685
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.685
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.685
RFX5 Sus scrofa ENSSSCG00000006625 I 0.685
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.685
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.685
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.685
RFX5 Sorex araneus ENSSARG00000000750 I 0.685
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.685
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.685
RFX5 Echinops telfairi ENSETEG00000013503 I 0.685
RFX5 Canis familiaris ENSCAFG00000012661 I 0.685
RFX5 Felis catus ENSFCAG00000005568 I 0.685
RFX5 Equus caballus ENSECAG00000024774 I 0.685
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.685
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.685
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.685
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.685
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.685
RFX5 Bos taurus ENSBTAG00000017580 I 0.685
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.685
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.684
rfx5 Danio rerio ENSDARG00000063258 I 0.684
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.684
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.683
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.681
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.681
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.681
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.680
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.679
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.679
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.679
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.679
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.679
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.679
RFX7 Oryzias latipes ENSORLG00000005342 I 0.679
RFX7 Danio rerio ENSDARG00000103691 I 0.679
RFX7 Homo sapiens ENSG00000181827 D 0.677
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.676
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.676
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.675
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.675
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.674
rfx7 Danio rerio ENSDARG00000077237 I 0.674
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.674
RFX7 Felis catus ENSFCAG00000029408 I 0.674
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.674
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.673
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.673
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.673
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.673
Aan_R011989 Calypte anna Aan_R011989 I 0.673
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.673
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.673
RFX7 Bos taurus ENSBTAG00000000565 I 0.673
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.673
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.673
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.673
RFX7 Canis familiaris ENSCAFG00000016029 I 0.673
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.673
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.673
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.673
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.673
RFX7 Procavia capensis ENSPCAG00000004974 I 0.673
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.673
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.673
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.673
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.673
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.673
Rfx7 Mus musculus ENSMUSG00000037674 D 0.673
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.673
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.673
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.673
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.673
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.673
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.673
RFX7 Equus caballus ENSECAG00000002379 I 0.673
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.673
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.673
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.673
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.672
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.672
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.672
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.672
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.672
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.672
RFX7 Sorex araneus ENSSARG00000010801 I 0.672
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.671
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.671
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.671
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.670
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.669
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.668
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.668
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.667
rfx7 Oryzias latipes ENSORLG00000008583 I 0.666
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.664
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.664
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.663
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.663
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.660
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.660
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.659
T265_11740 Opisthorchis viverrini T265_11740 I 0.657
csin102559 Clonorchis sinensis csin102559 I 0.657
RFX7 Echinops telfairi ENSETEG00000015037 I 0.657
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.656
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.654
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.654
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.654
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.654
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.652
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.652
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.651
D915_00887 Fasciola hepatica D915_00887 I 0.651
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.651