ENSAPLG00000005911 (Anas platyrhynchos)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSAPLG00000005911 T318140_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Rfx7
M00823_2.00
Mus musculus
GTYRCYRNSB

VSNYRGYRAC
PBM
Weirauch et al.(2013)
pTH3516
0.793 1.000
Rfx7
M00187_2.00
Mus musculus
BGTHDYYRNN

NNYRRHDACV
PBM
Badis et al.(2009)
Rfxdc2_3516
0.793 1.000
RFX7
M05729_2.00
Homo sapiens
BGTTRCYRY

RYRGYAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX
0.793 1.000
RFX7
M05730_2.00
Homo sapiens
BGTTGCYRB

VYRGCAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX
0.793 1.000
RFX5
M03458_2.00
Homo sapiens
BGTTRCYATRGYAACV

BGTTRCYATRGYAACV
SELEX
Jolma et al.(2013)
RFX5_1
0.710 0.620
RFX5
M03459_2.00
Homo sapiens
BGTTGCYATGGYAACV

BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_2
0.710 0.620
RFX5
M03460_2.00
Homo sapiens
BGTTGCYATGGYAACV

BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_3
0.710 0.620
RFX5
M05725_2.00
Homo sapiens
BGTTRCYANGBGTTGCYRN

NYRGCAACVCNTRGYAACV
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1
0.710 0.620
RFX5
M05726_2.00
Homo sapiens
NYRVYAACSGTTRCYAN

NTRGYAACSGTTRBYRN
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2
0.710 0.620
RFX5
M08009_2.00
Homo sapiens
KCRBYDGTTRCYRRG

CYYRGYAACHRVYGM
ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford
0.710 0.620
RFX5
M08010_2.00
Homo sapiens
DBVBYDGTTGCYRGGBVRR

YYBVCCYRGCAACHRVBVH
ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford
0.710 0.620
RFX5
M08011_2.00
Homo sapiens
TCVBYDGTTDCYRDG

CHYRGHAACHRVBGA
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford
0.710 0.620
RFX5
M08012_2.00
Homo sapiens
YDGTTRCYRKGBVRV

BYBVCMYRGYAACHR
ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford
0.710 0.620
RFX5
M09364_2.00
Homo sapiens
VNNVBYDGTTGCYRKGNVRV

BYBNCMYRGCAACHRVBNNB
Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A
0.710 0.620
RFX5
M09629_2.00
Homo sapiens
NDGTTRCYADGV

BCHTRGYAACHN
Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477
0.710 0.620
RFX5
M11249_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_03
0.710 0.620
RFX5
M11250_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_05
0.710 0.620
RFX5
M05727_2.00
Homo sapiens
BGTYRYYRNGBGTTGYYRN

NYRRCAACVCNYRRYRACV
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1
0.710 0.620
RFX5
M05728_2.00
Homo sapiens
NTRGYAASSGTYRBYRN

NYRVYRACSSTTRCYAN
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2
0.710 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAPLP00000005497 RFX 40 118

Links

Other RFX family TFs
Other Anas platyrhynchos TFs

232 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL013752 Aedes aegypti AAEL013752 I 0.686
AALB008384 Anopheles albimanus AALB008384 I 0.688
Aan_R010941 Calypte anna Aan_R010941 I 0.695
Aan_R011989 Calypte anna Aan_R011989 I 0.788
AARA004226 Anopheles arabiensis AARA004226 I 0.688
AATE016751 Anopheles atroparvus AATE016751 I 0.688
ACEP24602 Atta cephalotes ACEP24602 I 0.699
ACHR008891 Anopheles christyi ACHR008891 I 0.688
ACOM036649 Anopheles coluzzii ACOM036649 I 0.688
ACUA017169 Anopheles culicifacies ACUA017169 I 0.688
ADAC008404 Anopheles darlingi ADAC008404 I 0.688
ADIR010232 Anopheles dirus ADIR010232 I 0.688
AEPI006624 Anopheles epiroticus AEPI006624 I 0.688
AFAF011654 Anopheles farauti AFAF011654 I 0.688
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.712
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.788
AFUN011072 Anopheles funestus AFUN011072 I 0.688
AGAP013226 Anopheles gambiae AGAP013226 I 0.688
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.778
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.708
AMAG_10999 Allomyces macrogynus AMAG_10999 I 0.660
AMAG_11601 Allomyces macrogynus AMAG_11601 I 0.660
AMEC002251 Anopheles melas AMEC002251 I 0.688
AMEM009524 Anopheles merus AMEM009524 I 0.688
AMIN003942 Anopheles minimus AMIN003942 I 0.688
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.688
ASIS020285 Anopheles sinensis ASIS020285 I 0.688
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.688
A_01977 Schistosoma haematobium A_01977 I 0.707
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.678
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.778
CapteG131555 Capitella teleta CapteG131555 I 0.690
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.681
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.703
CLEC011984 Cimex lectularius CLEC011984 I 0.682
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.667
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.687
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.685
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.685
csin102559 Clonorchis sinensis csin102559 I 0.718
D915_00887 Fasciola hepatica D915_00887 I 0.659
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.700
DILT_0001462801 Diphyllobothrium latum DILT_0001462801 I 0.655
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.704
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.658
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.704
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.792
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.714
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.705
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.793
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.712
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.784
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.785
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.673
RFX7 Bos taurus ENSBTAG00000000565 I 0.793
RFX5 Bos taurus ENSBTAG00000017580 I 0.710
RFX5 Canis familiaris ENSCAFG00000012661 I 0.710
RFX7 Canis familiaris ENSCAFG00000016029 I 0.793
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.793
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.706
RFX7 Callithrix jacchus ENSCJAG00000002163 I 0.693
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.710
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.793
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.710
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.710
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.793
rfx5 Danio rerio ENSDARG00000063258 I 0.716
rfx7 Danio rerio ENSDARG00000077237 I 0.780
RFX7 Danio rerio ENSDARG00000103691 I 0.784
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.793
ENSDORG00000004908 Dipodomys ordii ENSDORG00000004908 I 0.693
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.710
RFX7 Equus caballus ENSECAG00000002379 I 0.788
RFX5 Equus caballus ENSECAG00000024774 I 0.710
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.697
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.778
RFX5 Echinops telfairi ENSETEG00000013503 I 0.710
RFX7 Echinops telfairi ENSETEG00000015037 I 0.773
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.720
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.793
RFX5 Felis catus ENSFCAG00000005568 I 0.710
RFX7 Felis catus ENSFCAG00000029408 I 0.788
RFX5 Homo sapiens ENSG00000143390 D 0.710
RFX7 Homo sapiens ENSG00000181827 D 0.793
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.780
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.760
RFX5 Gallus gallus ENSGALG00000000836 I 0.713
RFX7 Gorilla gorilla ENSGGOG00000002118 I 0.693
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.710
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.769
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.780
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.793
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.793
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.710
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.715
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.785
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.693
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.711
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.716
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.793
RFX7 Microcebus murinus ENSMICG00000000614 I 0.679
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.705
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.788
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.710
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.787
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.787
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.793
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.662
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.793
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.710
Rfx5 Mus musculus ENSMUSG00000005774 I 0.710
Rfx7 Mus musculus ENSMUSG00000037674 D 0.793
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.793
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.710
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.793
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.790
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.710
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.710
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.793
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.710
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.790
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.716
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.761
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.780
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.687
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.714
RFX7 Oryzias latipes ENSORLG00000005342 I 0.780
rfx7 Oryzias latipes ENSORLG00000008583 I 0.764
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.710
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.710
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.788
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.710
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.793
RFX7 Procavia capensis ENSPCAG00000004974 I 0.793
RFX5 Procavia capensis ENSPCAG00000011056 I 0.710
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.758
ENSPFOG00000003977 Poecilia formosa ENSPFOG00000003977 I 0.677
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.716
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.766
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.710
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.793
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.793
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.699
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.710
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.793
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.791
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.710
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.710
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.793
RFX5 Sorex araneus ENSSARG00000000750 I 0.710
RFX7 Sorex araneus ENSSARG00000010801 I 0.787
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.793
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.711
RFX7 Sus scrofa ENSSSCG00000004603 I 0.690
RFX5 Sus scrofa ENSSSCG00000006625 I 0.710
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.695
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.712
ENSSTOG00000027249 Ictidomys tridecemlineatus ENSSTOG00000027249 I 0.687
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.710
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.684
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.788
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.718
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.752
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.771
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.718
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.771
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.756
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.793
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.665
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.710
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.790
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.793
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.761
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.780
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.716
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.727
CG9727 Drosophila melanogaster FBgn0037445 I 0.685
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.685
GF16654 Drosophila ananassae FBgn0093675 I 0.685
GG10435 Drosophila erecta FBgn0102744 I 0.685
GH18082 Drosophila grimshawi FBgn0125550 I 0.685
GI24583 Drosophila mojavensis FBgn0147305 I 0.685
GL22063 Drosophila persimilis FBgn0159655 I 0.685
GM10553 Drosophila sechellia FBgn0165499 I 0.685
GD19544 Drosophila simulans FBgn0191039 I 0.685
GJ22650 Drosophila virilis FBgn0209754 I 0.685
GK13786 Drosophila willistoni FBgn0215794 I 0.685
GE24099 Drosophila yakuba FBgn0241238 I 0.685
GB49419 Apis mellifera GB49419 I 0.699
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.720
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.788
GPLIN_000191300 Globodera pallida GPLIN_000191300 I 0.658
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.711
HMEL011744 Heliconius melpomene HMEL011744 I 0.691
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.711
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.708
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.699
ISCW001129 Ixodes scapularis ISCW001129 I 0.679
KGM_16732 Danaus plexippus KGM_16732 I 0.690
L798_03377 Zootermopsis nevadensis L798_03377 I 0.700
LCUP014592 Lucilia cuprina LCUP014592 I 0.688
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.701
LotgiG138119 Lottia gigantea LotgiG138119 I 0.702
MCINX003210 Melitaea cinxia MCINX003210 I 0.691
MDOA009335 Musca domestica MDOA009335 I 0.688
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.705
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.785
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.710
NV23037 Nasonia vitripennis NV23037 I 0.698
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.715
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.697
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.699
PHUM035280 Pediculus humanus PHUM035280 I 0.692
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.708
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.781
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.659
SINV24627 Solenopsis invicta SINV24627 I 0.699
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.696
Smp_040350 Schistosoma mansoni Smp_040350 I 0.707
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.705
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.723
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.696
T265_11740 Opisthorchis viverrini T265_11740 I 0.718
Tal_R011248 Tyto alba Tal_R011248 I 0.688
TC008959 Tribolium castaneum TC008959 I 0.694
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.689
TsM_000553100 Taenia solium TsM_000553100 I 0.704
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.704
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.792
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.715
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.703
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.713