rfx7 (Danio rerio)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSDARG00000077237 T318195_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Rfx7
M00823_2.00
Mus musculus
GTYRCYRNSB

VSNYRGYRAC
PBM
Weirauch et al.(2013)
pTH3516
0.780 0.937
Rfx7
M00187_2.00
Mus musculus
BGTHDYYRNN

NNYRRHDACV
PBM
Badis et al.(2009)
Rfxdc2_3516
0.780 0.937
RFX7
M05729_2.00
Homo sapiens
BGTTRCYRY

RYRGYAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX
0.780 0.937
RFX7
M05730_2.00
Homo sapiens
BGTTGCYRB

VYRGCAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX
0.780 0.937
RFX5
M03458_2.00
Homo sapiens
BGTTRCYATRGYAACV

BGTTRCYATRGYAACV
SELEX
Jolma et al.(2013)
RFX5_1
0.718 0.646
RFX5
M03459_2.00
Homo sapiens
BGTTGCYATGGYAACV

BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_2
0.718 0.646
RFX5
M03460_2.00
Homo sapiens
BGTTGCYATGGYAACV

BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_3
0.718 0.646
RFX5
M05725_2.00
Homo sapiens
BGTTRCYANGBGTTGCYRN

NYRGCAACVCNTRGYAACV
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1
0.718 0.646
RFX5
M05726_2.00
Homo sapiens
NYRVYAACSGTTRCYAN

NTRGYAACSGTTRBYRN
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2
0.718 0.646
RFX5
M08009_2.00
Homo sapiens
KCRBYDGTTRCYRRG

CYYRGYAACHRVYGM
ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford
0.718 0.646
RFX5
M08010_2.00
Homo sapiens
DBVBYDGTTGCYRGGBVRR

YYBVCCYRGCAACHRVBVH
ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford
0.718 0.646
RFX5
M08011_2.00
Homo sapiens
TCVBYDGTTDCYRDG

CHYRGHAACHRVBGA
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford
0.718 0.646
RFX5
M08012_2.00
Homo sapiens
YDGTTRCYRKGBVRV

BYBVCMYRGYAACHR
ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford
0.718 0.646
RFX5
M09364_2.00
Homo sapiens
VNNVBYDGTTGCYRKGNVRV

BYBNCMYRGCAACHRVBNNB
Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A
0.718 0.646
RFX5
M09629_2.00
Homo sapiens
NDGTTRCYADGV

BCHTRGYAACHN
Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477
0.718 0.646
RFX5
M11249_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_03
0.718 0.646
RFX5
M11250_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_05
0.718 0.646
RFX5
M05727_2.00
Homo sapiens
BGTYRYYRNGBGTTGYYRN

NYRRCAACVCNYRRYRACV
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1
0.718 0.646
RFX5
M05728_2.00
Homo sapiens
NTRGYAASSGTYRBYRN

NYRVYRACSSTTRCYAN
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2
0.718 0.646
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000102179 RFX 91 169

Links

Other RFX family TFs
Other Danio rerio TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL013752 Aedes aegypti AAEL013752 I 0.686
AALB008384 Anopheles albimanus AALB008384 I 0.688
Aan_R010941 Calypte anna Aan_R010941 I 0.694
Aan_R011989 Calypte anna Aan_R011989 I 0.775
AARA004226 Anopheles arabiensis AARA004226 I 0.688
AATE016751 Anopheles atroparvus AATE016751 I 0.688
ACEP24602 Atta cephalotes ACEP24602 I 0.699
ACHR008891 Anopheles christyi ACHR008891 I 0.688
ACOM036649 Anopheles coluzzii ACOM036649 I 0.688
ACUA017169 Anopheles culicifacies ACUA017169 I 0.688
ADAC008404 Anopheles darlingi ADAC008404 I 0.688
ADIR010232 Anopheles dirus ADIR010232 I 0.688
AEPI006624 Anopheles epiroticus AEPI006624 I 0.688
AFAF011654 Anopheles farauti AFAF011654 I 0.688
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.712
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.775
AFUN011072 Anopheles funestus AFUN011072 I 0.688
AGAP013226 Anopheles gambiae AGAP013226 I 0.688
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.765
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.708
AMAG_10999 Allomyces macrogynus AMAG_10999 I 0.657
AMAG_11601 Allomyces macrogynus AMAG_11601 I 0.657
AMEC002251 Anopheles melas AMEC002251 I 0.688
AMEM009524 Anopheles merus AMEM009524 I 0.688
AMIN003942 Anopheles minimus AMIN003942 I 0.688
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.688
ASIS020285 Anopheles sinensis ASIS020285 I 0.688
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.688
A_01977 Schistosoma haematobium A_01977 I 0.713
BDDG_02784 Blastomyces dermatitidis BDDG_02784 I 0.652
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.682
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.765
CAOG_00356 Capsaspora owczarzaki CAOG_00356 I 0.650
CapteG131555 Capitella teleta CapteG131555 I 0.693
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.685
CG9727 Drosophila melanogaster FBgn0037445 I 0.685
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.705
CLEC011984 Cimex lectularius CLEC011984 I 0.686
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.672
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.684
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.685
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.685
csin102559 Clonorchis sinensis csin102559 I 0.723
D915_00887 Fasciola hepatica D915_00887 I 0.664
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.701
DILT_0001462801 Diphyllobothrium latum DILT_0001462801 I 0.655
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.710
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.662
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.710
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.713
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.713
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.780
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.711
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.788
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.789
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.674
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.780
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.780
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.718
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.718
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.780
ENSDORG00000004908 Dipodomys ordii ENSDORG00000004908 I 0.683
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.718
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.719
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.780
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.773
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.784
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.780
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.714
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.789
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.689
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.718
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.716
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.718
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.774
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.780
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.718
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.780
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.718
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.777
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.718
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.718
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.715
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.765
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.784
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.713
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.718
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.718
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.775
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.718
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.780
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.762
ENSPFOG00000003977 Poecilia formosa ENSPFOG00000003977 I 0.676
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.715
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.762
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.718
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.780
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.780
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.698
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.780
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.718
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.691
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.720
ENSSTOG00000027249 Ictidomys tridecemlineatus ENSSTOG00000027249 I 0.678
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.717
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.780
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.670
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.762
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.784
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.715
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.723
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.685
GB49419 Apis mellifera GB49419 I 0.699
GD19544 Drosophila simulans FBgn0191039 I 0.685
GE24099 Drosophila yakuba FBgn0241238 I 0.685
GF16654 Drosophila ananassae FBgn0093675 I 0.685
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.719
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.775
GG10435 Drosophila erecta FBgn0102744 I 0.685
GH18082 Drosophila grimshawi FBgn0125550 I 0.685
GI24583 Drosophila mojavensis FBgn0147305 I 0.685
GJ22650 Drosophila virilis FBgn0209754 I 0.685
GK13786 Drosophila willistoni FBgn0215794 I 0.685
GL22063 Drosophila persimilis FBgn0159655 I 0.685
GM10553 Drosophila sechellia FBgn0165499 I 0.685
GPLIN_000191300 Globodera pallida GPLIN_000191300 I 0.654
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.717
HMEL011744 Heliconius melpomene HMEL011744 I 0.695
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.717
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.714
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.699
ISCW001129 Ixodes scapularis ISCW001129 I 0.684
KAFR_0H03130 Kazachstania africana KAFR_0H03130 I 0.651
KGM_16732 Danaus plexippus KGM_16732 I 0.692
L798_03377 Zootermopsis nevadensis L798_03377 I 0.704
LCUP014592 Lucilia cuprina LCUP014592 I 0.688
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.703
LELG_03203 Lodderomyces elongisporus LELG_03203 I 0.651
LotgiG138119 Lottia gigantea LotgiG138119 I 0.712
MCINX003210 Melitaea cinxia MCINX003210 I 0.695
MDOA009335 Musca domestica MDOA009335 I 0.689
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.713
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.772
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.714
NV23037 Nasonia vitripennis NV23037 I 0.699
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.724
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.693
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.698
PHUM035280 Pediculus humanus PHUM035280 I 0.688
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.707
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.768
rfx5 Danio rerio ENSDARG00000063258 I 0.715
RFX5 Echinops telfairi ENSETEG00000013503 I 0.718
RFX5 Bos taurus ENSBTAG00000017580 I 0.718
RFX5 Equus caballus ENSECAG00000024774 I 0.718
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.718
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.718
RFX5 Sorex araneus ENSSARG00000000750 I 0.718
Rfx5 Mus musculus ENSMUSG00000005774 I 0.718
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.713
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.718
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.718
RFX5 Gallus gallus ENSGALG00000000836 I 0.713
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.668
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.715
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.718
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.717
RFX5 Canis familiaris ENSCAFG00000012661 I 0.718
RFX5 Homo sapiens ENSG00000143390 D 0.718
RFX5 Sus scrofa ENSSSCG00000006625 I 0.718
RFX5 Felis catus ENSFCAG00000005568 I 0.718
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.714
RFX5 Procavia capensis ENSPCAG00000011056 I 0.710
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.718
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.718
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.718
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.718
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.705
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.702
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.765
RFX7 Echinops telfairi ENSETEG00000015037 I 0.760
RFX7 Equus caballus ENSECAG00000002379 I 0.775
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.780
RFX7 Canis familiaris ENSCAFG00000016029 I 0.780
RFX7 Homo sapiens ENSG00000181827 D 0.780
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.784
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.779
RFX7 Danio rerio ENSDARG00000103691 I 0.788
RFX7 Bos taurus ENSBTAG00000000565 I 0.780
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.779
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.764
RFX7 Felis catus ENSFCAG00000029408 I 0.775
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.780
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.775
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.775
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.680
RFX7 Sus scrofa ENSSSCG00000004603 I 0.680
RFX7 Sorex araneus ENSSARG00000010801 I 0.774
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.780
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.778
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.780
RFX7 Procavia capensis ENSPCAG00000004974 I 0.780
rfx7 Oryzias latipes ENSORLG00000008583 I 0.768
RFX7 Oryzias latipes ENSORLG00000005342 I 0.784
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.683
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.777
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.780
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.780
Rfx7 Mus musculus ENSMUSG00000037674 D 0.780
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.780
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.774
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.757
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.775
RFX7 Microcebus murinus ENSMICG00000000614 I 0.669
RFX7 Callithrix jacchus ENSCJAG00000002163 I 0.684
RFX7 Gorilla gorilla ENSGGOG00000002118 I 0.684
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.780
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.780
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.780
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.777
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.761
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.775
sak1 Schizosaccharomyces pombe SPAC3G9.14 I 0.652
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.664
SINV24627 Solenopsis invicta SINV24627 I 0.699
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.701
Smp_040350 Schistosoma mansoni Smp_040350 I 0.713
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.711
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.719
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.701
T265_11740 Opisthorchis viverrini T265_11740 I 0.723
Tal_R011248 Tyto alba Tal_R011248 I 0.678
TC008959 Tribolium castaneum TC008959 I 0.695
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.698
TsM_000553100 Taenia solium TsM_000553100 I 0.710
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.710
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.710