RFX4 (Meleagris gallopavo)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSMGAG00000012867 T318317_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Rfx4
M00186_2.00
Mus musculus
GTHDYYNNSN

NSNNRRHDAC
PBM
Badis et al.(2009)
Rfx4_3761
0.783 1.000
RFX4
M03456_2.00
Homo sapiens
NGTWRYCATRGHWACN

NGTWDCYATGRYWACN
SELEX
Jolma et al.(2013)
RFX4_1
0.783 1.000
RFX4
M03457_2.00
Homo sapiens
NGTTGCYRRGCAACS

SGTTGCYYRGCAACN
SELEX
Jolma et al.(2013)
RFX4_2
0.783 1.000
RFX4
M05721_2.00
Homo sapiens
BGTWRYCATGRYWACV

BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX
0.783 1.000
RFX4
M05722_2.00
Homo sapiens
BGTWRYCATGRYWACV

BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX
0.783 1.000
RFX4
M02448_2.00
Cavia porcellus
GTHDYYNNGN

NCNNRRHDAC
PBM
Weirauch et al.(2014)
pTH9249
0.783 0.987
Rfx6
M09365_2.00
Mus musculus
BDGTWKCYNDG

CHNRGMAACHV
Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C
0.717 0.696
Rfx3
M00188_2.00
Mus musculus
SNTRRHDACN

NGTHDYYANS
PBM
Badis et al.(2009)
Rfx3_3961
0.714 0.684
Rfx3
M03463_2.00
Mus musculus
SGTTRCCATGGYAACS

SGTTRCCATGGYAACS
SELEX
Jolma et al.(2013)
Rfx3_1
0.714 0.684
Rfx3
M09368_2.00
Mus musculus
BBGTTGCCATGGNRAC

GTYNCCATGGCAACVV
Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C
0.714 0.684
RFX2
M02449_2.00
Homo sapiens
BGTHRYYADG

CHTRRYDACV
PBM
Weirauch et al.(2014)
pTH9194
0.713 0.671
RFX2
M02450_2.00
Ornithorhynchus anatinus
NGTHRYYANV

BNTRRYDACN
PBM
Weirauch et al.(2014)
pTH9269
0.713 0.671
RFX1
M02447_2.00
Anolis carolinensis
GTHRCYANGN

NCNTRGYDAC
PBM
Weirauch et al.(2014)
pTH9223
0.712 0.646
RFX1
M02451_2.00
Tetraodon nigroviridis
GTHDYYANGN

NCNTRRHDAC
PBM
Weirauch et al.(2014)
pTH9385
0.712 0.646
RFX1
M05723_2.00
Homo sapiens
BGTTRYCATGRYAACV

BGTTRYCATGRYAACV
SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX
0.712 0.646
Rfx1
M08162_2.00
Mus musculus
GTTGCYADGGNRAC

GTYNCCHTRGCAAC
ChIP-seq
Mathelier et al.(2014)
MA0509.1
0.712 0.646
RFX1
M09363_2.00
Homo sapiens
BBBSSNGTTGCCADGGNRMCVV

BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B
0.712 0.646
Rfx1
M09367_2.00
Mus musculus
BBBSSNGTTGCCADGGNRMCVV

BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A
0.712 0.646
RFX1
M11245_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EFC_Q6
0.712 0.646
RFX1
M11246_2.00
Homo sapiens
HNGTTRCYWVGYDMYNN

NNRKHRCBWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_01
0.712 0.646
RFX1
M11247_2.00
Homo sapiens
HNGTTRCYWBVGYDMYNN

NNRKHRCBVWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_02
0.712 0.646
RFX1
M11248_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX1_Q6
0.712 0.646
RFX1
M05724_2.00
Homo sapiens
BGTWRYCATGRYWACV

BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX
0.712 0.646
XP_002157607.1
M02456_2.00
Hydra magnipapillata
GTHDYYDNVN

NBNHRRHDAC
PBM
Weirauch et al.(2014)
pTH9199
0.711 0.646
G4VLF2_SCHMA
M02452_2.00
Schistosoma mansoni
GTTGCTAD

HTAGCAAC
PBM
Weirauch et al.(2014)
pTH8587
0.710 0.620
GB41876
M02453_2.00
Apis mellifera
GTHDCYANVN

NBNTRGHDAC
PBM
Weirauch et al.(2014)
pTH9226
0.709 0.658
Sjc_0102030
M02455_2.00
Schistosoma japonicum
GTTRCYANG

CNTRGYAAC
PBM
Weirauch et al.(2014)
pTH9285
0.708 0.608
Rfx
M03959_2.00
Drosophila melanogaster
NGTHRCYATRGYDACN

NGTHRCYATRGYDACN
SELEX
Nitta et al.(2015)
Rfx_1
0.708 0.608
Rfx
M03960_2.00
Drosophila melanogaster
GTTGCTARGCAAC

GTTGCYTAGCAAC
SELEX
Nitta et al.(2015)
Rfx_2
0.708 0.608
Rfx
M03961_2.00
Drosophila melanogaster
BGTWRCCATGGYWACV

BGTWRCCATGGYWACV
SELEX
Nitta et al.(2015)
Rfx_3
0.708 0.608
Rfx
M03962_2.00
Drosophila melanogaster
GTTRCYAWTRGYAAC

GTTRCYAWTRGYAAC
SELEX
Nitta et al.(2015)
Rfx_4
0.708 0.608
Rfx
M03963_2.00
Drosophila melanogaster
GTTGCTARGCAAC

GTTGCYTAGCAAC
SELEX
Nitta et al.(2015)
Rfx_5
0.708 0.608
Rfx2
M03461_2.00
Mus musculus
BGTTRCCATGGYAACV

BGTTRCCATGGYAACV
SELEX
Jolma et al.(2013)
Rfx2_1
0.705 0.633
Rfx2
M03462_2.00
Mus musculus
SGTTGCTARGCAACV

BGTTGCYTAGCAACS
SELEX
Jolma et al.(2013)
Rfx2_2
0.705 0.633
Rfx2
M05888_2.00
Mus musculus
NGTTRCYATGGHDAY

RTHDCCATRGYAACN
SMiLE-seq
Isakova et al.(2017)
RFX2
0.705 0.633
Rfx2
M09366_2.00
Mus musculus
NBYBGTYNCCMTGGCAACNSSS

SSSNGTTGCCAKGGNRACVRVN
Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A
0.705 0.633
RFX3
M03452_2.00
Homo sapiens
NGTTRCCATGGHAACV

BGTTDCCATGGYAACN
SELEX
Jolma et al.(2013)
RFX3_1
0.704 0.646
RFX3
M03453_2.00
Homo sapiens
BGTTGCTARGCAACS

SGTTGCYTAGCAACV
SELEX
Jolma et al.(2013)
RFX3_2
0.704 0.646
RFX3
M02750_2.00
Homo sapiens
GTTRYYATGG

CCATRRYAAC
SELEX
Jolma et al.(2010)
RFX3_dimer
0.704 0.646
RFX3
M05715_2.00
Homo sapiens
NGTTRYYATRRYAACN

NGTTRYYATRRYAACN
SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1
0.704 0.646
RFX3
M05716_2.00
Homo sapiens
BGTTGCTARGCAACS

SGTTGCYTAGCAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2
0.704 0.646
RFX3
M09361_2.00
Homo sapiens
BGTTRCCATGGYRN

NYRCCATGGYAACV
Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B
0.704 0.646
RFX3
M09627_2.00
Homo sapiens
BNGTTGCCATGGCAAC

GTTGCCATGGCAACNV
Misc
Heinz et al.(2010)
K562-RFX3_SRA012198
0.704 0.646
RFX3
M05717_2.00
Homo sapiens
BGTTRYYATRRYAACV

BGTTRYYATRRYAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1
0.704 0.646
RFX3
M05718_2.00
Homo sapiens
BGTTGCTARGCAACV

BGTTGCYTAGCAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2
0.704 0.646
daf-19
M00709_2.00
Caenorhabditis elegans
SGTTRCTADG

CHTAGYAACS
PBM
Narasimhan et al.(2015)
pTH10021
0.704 0.608
RFX2
M03454_2.00
Homo sapiens
BGTTRCCATGGYAACV

BGTTRCCATGGYAACV
SELEX
Jolma et al.(2013)
RFX2_1
0.703 0.633
RFX2
M03455_2.00
Homo sapiens
SGTTGCTARGCAACS

SGTTGCYTAGCAACS
SELEX
Jolma et al.(2013)
RFX2_2
0.703 0.633
RFX2
M05719_2.00
Homo sapiens
NGTWDYYATRRHWACN

NGTWDYYATRRHWACN
SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX
0.703 0.633
RFX2
M09362_2.00
Homo sapiens
YNGTTGCCATGGVRACVV

BBGTYBCCATGGCAACNR
Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A
0.703 0.633
RFX2
M09628_2.00
Homo sapiens
BGTTKCCATGGMAAC

GTTKCCATGGMAACV
Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402
0.703 0.633
RFX2
M05720_2.00
Homo sapiens
BGTTRCCATGRYAACV

BGTTRYCATGGYAACV
SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX
0.703 0.633
PHUM046580
M02454_2.00
Pediculus humanus
NGTHDCYANV

BNTRGHDACN
PBM
Weirauch et al.(2014)
pTH9278
0.700 0.646
RFX1
M00066_2.00
Saccharomyces cerevisiae
NSGTTGCYAN

NTRGCAACSN
PBM
Badis et al.(2008)
RFX1_4537
0.651 0.430
RFX1
M07494_2.00
Saccharomyces cerevisiae
BGTTRCYA

TRGYAACV
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1
0.651 0.430
RFX1
M08600_2.00
Saccharomyces cerevisiae
CGTYRBYAYRGYWACM

KGTWRCYRTRVYRACG
Misc
DeBoer et al.(2011)
YLR176C_1478
0.651 0.430
RFX1
M08601_2.00
Saccharomyces cerevisiae
BGTTRCYA

TRGYAACV
Misc
DeBoer et al.(2011)
YLR176C_496
0.651 0.430
RFX1
M11251_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$RFX1_02
0.651 0.430
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMGAP00000013568 RFX 44 122

Links

Other RFX family TFs
Other Meleagris gallopavo TFs

620 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R005980 Calypte anna Aan_R005980 I 0.000
Alligator_sinensis_CCG010682.1 Alligator sinensis Alligator_sinensis_CCG010682.1 I 0.000
Cmyd_10005145 Chelonia mydas Cmyd_10005145 I 0.000
ENSAMEG00000009650 Ailuropoda melanoleuca ENSAMEG00000009650 I 0.000
ENSBTAP00000022249-D1 Bos grunniens ENSBTAP00000022249-D1 I 0.000
ENSCSAG00000000746 Chlorocebus sabaeus ENSCSAG00000000746 I 0.000
ENSFALG00000009796 Ficedula albicollis ENSFALG00000009796 I 0.000
ENSMEUG00000005297 Macropus eugenii ENSMEUG00000005297 I 0.000
ENSMGAG00000001275 Meleagris gallopavo ENSMGAG00000001275 I 0.000
ENSMPUG00000006774 Mustela putorius furo ENSMPUG00000006774 I 0.000
ENSNLEG00000008569 Nomascus leucogenys ENSNLEG00000008569 I 0.000
ENSP00000366902 Macaca fascicularis ENSP00000366902 I 0.000
ENSPANG00000021173 Papio anubis ENSPANG00000021173 I 0.000
ENSPPYG00000001938 Pongo abelii ENSPPYG00000001938 I 0.000
ENSPSIG00000004516 Pelodiscus sinensis ENSPSIG00000004516 I 0.000
ENSSHAG00000007236 Sarcophilus harrisii ENSSHAG00000007236 I 0.000
ENSSTOG00000026188 Ictidomys tridecemlineatus ENSSTOG00000026188 I 0.000
Gfo_R002632 Geospiza fortis Gfo_R002632 I 0.000
Myotis_brandtii_ZBTB48_10024038 Myotis brandtii Myotis_brandtii_ZBTB48_10024038 I 0.000
Pvit_11906 Pogona vitticeps Pvit_11906 I 0.000
ZBTB48 Pan troglodytes ENSPTRG00000030844 I 0.000
Zbtb48 Rattus norvegicus ENSRNOG00000009595 I 0.000
ZBTB48 Taeniopygia guttata ENSTGUG00000002589 I 0.000
ZBTB48 Sus scrofa ENSSSCG00000003383 I 0.000
ZBTB48 Dasypus novemcinctus ENSDNOG00000004094 I 0.000
ZBTB48 Tupaia belangeri ENSTBEG00000014014 I 0.000
ZBTB48 Microcebus murinus ENSMICG00000016317 I 0.000
ZBTB48 Ochotona princeps ENSOPRG00000012169 I 0.000
ZBTB48 Canis familiaris ENSCAFG00000019615 I 0.000
ZBTB48 Cavia porcellus ENSCPOG00000009998 I 0.000
Zbtb48 Dipodomys ordii ENSDORG00000009677 I 0.000
ZBTB48 Equus caballus ENSECAG00000010788 I 0.000
ZBTB48 Echinops telfairi ENSETEG00000016655 I 0.000
ZBTB48 Felis catus ENSFCAG00000000660 I 0.000
ZBTB48 Homo sapiens ENSG00000204859 D 0.000
ZBTB48 Gallus gallus ENSGALG00000000637 I 0.000
ZBTB48 Loxodonta africana ENSLAFG00000005854 I 0.000
ZBTB48 Macaca mulatta ENSMMUG00000032281 I 0.000
Zbtb48 Mus musculus ENSMUSG00000028952 I 0.000
ZBTB48 Ornithorhynchus anatinus ENSOANG00000012292 I 0.000
ZBTB48 Otolemur garnettii ENSOGAG00000001520 I 0.000
ZBTB48 Bos taurus ENSBTAG00000016735 I 0.000