ENSMMUG00000013172 (Macaca mulatta)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSMMUG00000013172 T318338_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RFX5
M03458_2.00
Homo sapiens
BGTTRCYATRGYAACV

BGTTRCYATRGYAACV
SELEX
Jolma et al.(2013)
RFX5_1
0.792 1.000
RFX5
M03459_2.00
Homo sapiens
BGTTGCYATGGYAACV

BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_2
0.792 1.000
RFX5
M03460_2.00
Homo sapiens
BGTTGCYATGGYAACV

BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_3
0.792 1.000
RFX5
M05725_2.00
Homo sapiens
BGTTRCYANGBGTTGCYRN

NYRGCAACVCNTRGYAACV
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1
0.792 1.000
RFX5
M05726_2.00
Homo sapiens
NYRVYAACSGTTRCYAN

NTRGYAACSGTTRBYRN
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2
0.792 1.000
RFX5
M08009_2.00
Homo sapiens
KCRBYDGTTRCYRRG

CYYRGYAACHRVYGM
ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford
0.792 1.000
RFX5
M08010_2.00
Homo sapiens
DBVBYDGTTGCYRGGBVRR

YYBVCCYRGCAACHRVBVH
ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford
0.792 1.000
RFX5
M08011_2.00
Homo sapiens
TCVBYDGTTDCYRDG

CHYRGHAACHRVBGA
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford
0.792 1.000
RFX5
M08012_2.00
Homo sapiens
YDGTTRCYRKGBVRV

BYBVCMYRGYAACHR
ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford
0.792 1.000
RFX5
M09364_2.00
Homo sapiens
VNNVBYDGTTGCYRKGNVRV

BYBNCMYRGCAACHRVBNNB
Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A
0.792 1.000
RFX5
M09629_2.00
Homo sapiens
NDGTTRCYADGV

BCHTRGYAACHN
Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477
0.792 1.000
RFX5
M11249_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_03
0.792 1.000
RFX5
M11250_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_05
0.792 1.000
RFX5
M05727_2.00
Homo sapiens
BGTYRYYRNGBGTTGYYRN

NYRRCAACVCNYRRYRACV
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1
0.792 1.000
RFX5
M05728_2.00
Homo sapiens
NTRGYAASSGTYRBYRN

NYRVYRACSSTTRCYAN
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2
0.792 1.000
Rfx7
M00823_2.00
Mus musculus
GTYRCYRNSB

VSNYRGYRAC
PBM
Weirauch et al.(2013)
pTH3516
0.710 0.620
Rfx7
M00187_2.00
Mus musculus
BGTHDYYRNN

NNYRRHDACV
PBM
Badis et al.(2009)
Rfxdc2_3516
0.710 0.620
RFX7
M05729_2.00
Homo sapiens
BGTTRCYRY

RYRGYAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX
0.710 0.620
RFX7
M05730_2.00
Homo sapiens
BGTTGCYRB

VYRGCAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX
0.710 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMMUP00000017303 RFX 89 168

Links

Other RFX family TFs
Other Macaca mulatta TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACEP16720 Atta cephalotes ACEP16720 I 0.000
ACYPI002885 Acyrthosiphon pisum ACYPI002885 I 0.000
Alligator_sinensis_CCG003246.1 Alligator sinensis Alligator_sinensis_CCG003246.1 N 0.000
ASU_00906 Ascaris suum ASU_00906 I 0.000
BGLB003447 Biomphalaria glabrata BGLB003447 I 0.000
BXY_1193200 Bursaphelenchus xylophilus BXY_1193200 I 0.000
CapteG111555 Capitella teleta CapteG111555 I 0.000
CapteG40198 Capitella teleta CapteG40198 N 0.000
Cflo_07366--XP_001121752.1_APIME Camponotus floridanus Cflo_07366--XP_001121752.1_APIME I 0.000
CGI_10006159 Crassostrea gigas CGI_10006159 I 0.000
Cmyd_10015602 Chelonia mydas Cmyd_10015602 N 0.000
EEL_0000313101 Elaeophora elaphi EEL_0000313101 I 0.000
ENSLACG00000010819 Latimeria chalumnae ENSLACG00000010819 N 0.000
ENSLOCG00000005947 Lepisosteus oculatus ENSLOCG00000005947 I 0.000
ENSONIG00000004794 Oreochromis niloticus ENSONIG00000004794 N 0.000
ENSPFOG00000001440 Poecilia formosa ENSPFOG00000001440 N 0.000
ENSXMAG00000012768 Xiphophorus maculatus ENSXMAG00000012768 N 0.000
estExt_fgenesh2_kg.C_80001 Branchiostoma floridae estExt_fgenesh2_kg.C_80001 I 0.000
estExt_fgenesh2_pg.C_1200108 Branchiostoma floridae estExt_fgenesh2_pg.C_1200108 I 0.000
e_gw.6.414.1 Branchiostoma floridae e_gw.6.414.1 I 0.000
fd102C Drosophila melanogaster FBgn0039937 D 0.000
foxq2 Oryzias latipes ENSORLG00000004973 N 0.000
foxq2 Danio rerio ENSDARG00000071394 N 0.000
GA10799 Drosophila pseudoobscura FBgn0070855 I 0.000
GB50374 Apis mellifera GB50374 I 0.000
GE14501 Drosophila yakuba FBgn0232105 I 0.000
GF10343 Drosophila ananassae FBgn0087384 I 0.000
GG16435 Drosophila erecta FBgn0108666 I 0.000
GH24005 Drosophila grimshawi FBgn0131461 I 0.000
GI14084 Drosophila mojavensis FBgn0136838 I 0.000
GJ15974 Drosophila virilis FBgn0203160 I 0.000
GK13662 Drosophila willistoni FBgn0215670 I 0.000
GL15611 Drosophila persimilis FBgn0153215 I 0.000
GM26767 Drosophila sechellia FBgn0181620 I 0.000
HelroG84905 Helobdella robusta HelroG84905 I 0.000
Hsal_00505--XP_001121752.1_APIME Harpegnathos saltator Hsal_00505--XP_001121752.1_APIME I 0.000
ISCW003951 Ixodes scapularis ISCW003951 I 0.000
LCUP005975 Lucilia cuprina LCUP005975 I 0.000
LotgiG69928 Lottia gigantea LotgiG69928 I 0.000
LotgiG79770 Lottia gigantea LotgiG79770 I 0.000
LotgiG79781 Lottia gigantea LotgiG79781 I 0.000
LotgiG99434 Lottia gigantea LotgiG99434 I 0.000
nDi.2.2.2.g05283 Dirofilaria immitis nDi.2.2.2.g05283 I 0.000
NEMVEDRAFT_v1g125256 Nematostella vectensis NEMVEDRAFT_v1g125256 I 0.000
NEMVEDRAFT_v1g59063 Nematostella vectensis NEMVEDRAFT_v1g59063 I 0.000
NV18839 Nasonia vitripennis NV18839 I 0.000
Ocbimv22038677m.g Octopus bimaculoides Ocbimv22038677m.g I 0.000
Ogr12164 Ophisaurus gracilis Ogr12164 N 0.000
PHUM244390 Pediculus humanus PHUM244390 I 0.000
Pvit_09831 Pogona vitticeps Pvit_09831 N 0.000
RPRC002475 Rhodnius prolixus RPRC002475 I 0.000
Sakowv30044994m.g Saccoglossus kowalevskii Sakowv30044994m.g N 0.000
SINV17382 Solenopsis invicta SINV17382 I 0.000
TCNE_0000717001 Toxocara canis TCNE_0000717001 I 0.000