RFX4 (Macaca mulatta)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSMMUG00000022118 T318343_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Rfx4
M00186_2.00
Mus musculus
GTHDYYNNSN

NSNNRRHDAC
PBM
Badis et al.(2009)
Rfx4_3761
0.783 1.000
RFX4
M03456_2.00
Homo sapiens
NGTWRYCATRGHWACN

NGTWDCYATGRYWACN
SELEX
Jolma et al.(2013)
RFX4_1
0.783 1.000
RFX4
M03457_2.00
Homo sapiens
NGTTGCYRRGCAACS

SGTTGCYYRGCAACN
SELEX
Jolma et al.(2013)
RFX4_2
0.783 1.000
RFX4
M05721_2.00
Homo sapiens
BGTWRYCATGRYWACV

BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX
0.783 1.000
RFX4
M05722_2.00
Homo sapiens
BGTWRYCATGRYWACV

BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX
0.783 1.000
RFX4
M02448_2.00
Cavia porcellus
GTHDYYNNGN

NCNNRRHDAC
PBM
Weirauch et al.(2014)
pTH9249
0.783 0.987
Rfx6
M09365_2.00
Mus musculus
BDGTWKCYNDG

CHNRGMAACHV
Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C
0.717 0.696
Rfx3
M00188_2.00
Mus musculus
SNTRRHDACN

NGTHDYYANS
PBM
Badis et al.(2009)
Rfx3_3961
0.714 0.684
Rfx3
M03463_2.00
Mus musculus
SGTTRCCATGGYAACS

SGTTRCCATGGYAACS
SELEX
Jolma et al.(2013)
Rfx3_1
0.714 0.684
Rfx3
M09368_2.00
Mus musculus
BBGTTGCCATGGNRAC

GTYNCCATGGCAACVV
Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C
0.714 0.684
RFX2
M02449_2.00
Homo sapiens
BGTHRYYADG

CHTRRYDACV
PBM
Weirauch et al.(2014)
pTH9194
0.713 0.671
RFX2
M02450_2.00
Ornithorhynchus anatinus
NGTHRYYANV

BNTRRYDACN
PBM
Weirauch et al.(2014)
pTH9269
0.713 0.671
RFX1
M02447_2.00
Anolis carolinensis
GTHRCYANGN

NCNTRGYDAC
PBM
Weirauch et al.(2014)
pTH9223
0.712 0.646
RFX1
M02451_2.00
Tetraodon nigroviridis
GTHDYYANGN

NCNTRRHDAC
PBM
Weirauch et al.(2014)
pTH9385
0.712 0.646
RFX1
M05723_2.00
Homo sapiens
BGTTRYCATGRYAACV

BGTTRYCATGRYAACV
SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX
0.712 0.646
Rfx1
M08162_2.00
Mus musculus
GTTGCYADGGNRAC

GTYNCCHTRGCAAC
ChIP-seq
Mathelier et al.(2014)
MA0509.1
0.712 0.646
RFX1
M09363_2.00
Homo sapiens
BBBSSNGTTGCCADGGNRMCVV

BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B
0.712 0.646
Rfx1
M09367_2.00
Mus musculus
BBBSSNGTTGCCADGGNRMCVV

BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A
0.712 0.646
RFX1
M11245_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EFC_Q6
0.712 0.646
RFX1
M11246_2.00
Homo sapiens
HNGTTRCYWVGYDMYNN

NNRKHRCBWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_01
0.712 0.646
RFX1
M11247_2.00
Homo sapiens
HNGTTRCYWBVGYDMYNN

NNRKHRCBVWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_02
0.712 0.646
RFX1
M11248_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX1_Q6
0.712 0.646
RFX1
M05724_2.00
Homo sapiens
BGTWRYCATGRYWACV

BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX
0.712 0.646
XP_002157607.1
M02456_2.00
Hydra magnipapillata
GTHDYYDNVN

NBNHRRHDAC
PBM
Weirauch et al.(2014)
pTH9199
0.711 0.646
G4VLF2_SCHMA
M02452_2.00
Schistosoma mansoni
GTTGCTAD

HTAGCAAC
PBM
Weirauch et al.(2014)
pTH8587
0.710 0.620
GB41876
M02453_2.00
Apis mellifera
GTHDCYANVN

NBNTRGHDAC
PBM
Weirauch et al.(2014)
pTH9226
0.709 0.658
Sjc_0102030
M02455_2.00
Schistosoma japonicum
GTTRCYANG

CNTRGYAAC
PBM
Weirauch et al.(2014)
pTH9285
0.708 0.608
Rfx
M03959_2.00
Drosophila melanogaster
NGTHRCYATRGYDACN

NGTHRCYATRGYDACN
SELEX
Nitta et al.(2015)
Rfx_1
0.708 0.608
Rfx
M03960_2.00
Drosophila melanogaster
GTTGCTARGCAAC

GTTGCYTAGCAAC
SELEX
Nitta et al.(2015)
Rfx_2
0.708 0.608
Rfx
M03961_2.00
Drosophila melanogaster
BGTWRCCATGGYWACV

BGTWRCCATGGYWACV
SELEX
Nitta et al.(2015)
Rfx_3
0.708 0.608
Rfx
M03962_2.00
Drosophila melanogaster
GTTRCYAWTRGYAAC

GTTRCYAWTRGYAAC
SELEX
Nitta et al.(2015)
Rfx_4
0.708 0.608
Rfx
M03963_2.00
Drosophila melanogaster
GTTGCTARGCAAC

GTTGCYTAGCAAC
SELEX
Nitta et al.(2015)
Rfx_5
0.708 0.608
Rfx2
M03461_2.00
Mus musculus
BGTTRCCATGGYAACV

BGTTRCCATGGYAACV
SELEX
Jolma et al.(2013)
Rfx2_1
0.705 0.633
Rfx2
M03462_2.00
Mus musculus
SGTTGCTARGCAACV

BGTTGCYTAGCAACS
SELEX
Jolma et al.(2013)
Rfx2_2
0.705 0.633
Rfx2
M05888_2.00
Mus musculus
NGTTRCYATGGHDAY

RTHDCCATRGYAACN
SMiLE-seq
Isakova et al.(2017)
RFX2
0.705 0.633
Rfx2
M09366_2.00
Mus musculus
NBYBGTYNCCMTGGCAACNSSS

SSSNGTTGCCAKGGNRACVRVN
Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A
0.705 0.633
RFX3
M03452_2.00
Homo sapiens
NGTTRCCATGGHAACV

BGTTDCCATGGYAACN
SELEX
Jolma et al.(2013)
RFX3_1
0.704 0.646
RFX3
M03453_2.00
Homo sapiens
BGTTGCTARGCAACS

SGTTGCYTAGCAACV
SELEX
Jolma et al.(2013)
RFX3_2
0.704 0.646
RFX3
M02750_2.00
Homo sapiens
GTTRYYATGG

CCATRRYAAC
SELEX
Jolma et al.(2010)
RFX3_dimer
0.704 0.646
RFX3
M05715_2.00
Homo sapiens
NGTTRYYATRRYAACN

NGTTRYYATRRYAACN
SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1
0.704 0.646
RFX3
M05716_2.00
Homo sapiens
BGTTGCTARGCAACS

SGTTGCYTAGCAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2
0.704 0.646
RFX3
M09361_2.00
Homo sapiens
BGTTRCCATGGYRN

NYRCCATGGYAACV
Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B
0.704 0.646
RFX3
M09627_2.00
Homo sapiens
BNGTTGCCATGGCAAC

GTTGCCATGGCAACNV
Misc
Heinz et al.(2010)
K562-RFX3_SRA012198
0.704 0.646
RFX3
M05717_2.00
Homo sapiens
BGTTRYYATRRYAACV

BGTTRYYATRRYAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1
0.704 0.646
RFX3
M05718_2.00
Homo sapiens
BGTTGCTARGCAACV

BGTTGCYTAGCAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2
0.704 0.646
daf-19
M00709_2.00
Caenorhabditis elegans
SGTTRCTADG

CHTAGYAACS
PBM
Narasimhan et al.(2015)
pTH10021
0.704 0.608
RFX2
M03454_2.00
Homo sapiens
BGTTRCCATGGYAACV

BGTTRCCATGGYAACV
SELEX
Jolma et al.(2013)
RFX2_1
0.703 0.633
RFX2
M03455_2.00
Homo sapiens
SGTTGCTARGCAACS

SGTTGCYTAGCAACS
SELEX
Jolma et al.(2013)
RFX2_2
0.703 0.633
RFX2
M05719_2.00
Homo sapiens
NGTWDYYATRRHWACN

NGTWDYYATRRHWACN
SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX
0.703 0.633
RFX2
M09362_2.00
Homo sapiens
YNGTTGCCATGGVRACVV

BBGTYBCCATGGCAACNR
Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A
0.703 0.633
RFX2
M09628_2.00
Homo sapiens
BGTTKCCATGGMAAC

GTTKCCATGGMAACV
Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402
0.703 0.633
RFX2
M05720_2.00
Homo sapiens
BGTTRCCATGRYAACV

BGTTRYCATGGYAACV
SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX
0.703 0.633
PHUM046580
M02454_2.00
Pediculus humanus
NGTHDCYANV

BNTRGHDACN
PBM
Weirauch et al.(2014)
pTH9278
0.700 0.646
RFX1
M00066_2.00
Saccharomyces cerevisiae
NSGTTGCYAN

NTRGCAACSN
PBM
Badis et al.(2008)
RFX1_4537
0.651 0.430
RFX1
M07494_2.00
Saccharomyces cerevisiae
BGTTRCYA

TRGYAACV
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1
0.651 0.430
RFX1
M08600_2.00
Saccharomyces cerevisiae
CGTYRBYAYRGYWACM

KGTWRCYRTRVYRACG
Misc
DeBoer et al.(2011)
YLR176C_1478
0.651 0.430
RFX1
M08601_2.00
Saccharomyces cerevisiae
BGTTRCYA

TRGYAACV
Misc
DeBoer et al.(2011)
YLR176C_496
0.651 0.430
RFX1
M11251_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$RFX1_02
0.651 0.430
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMMUP00000029123 RFX 67 145

Links

Other RFX family TFs
Other Macaca mulatta TFs

620 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
HSFY2 Homo sapiens ENSG00000169953 D 0.000
HSF5 Homo sapiens ENSG00000176160 D 0.000
HSFY1 Homo sapiens ENSG00000172468 D 0.000
estExt_fgenesh2_pg.C_70302 Branchiostoma floridae estExt_fgenesh2_pg.C_70302 I 0.000
ENSTNIG00000008554 Tetraodon nigroviridis ENSTNIG00000008554 I 0.000
ENSTGUG00000015457 Taeniopygia guttata ENSTGUG00000015457 I 0.000
ENSSTOG00000020272 Ictidomys tridecemlineatus ENSSTOG00000020272 I 0.000
HSF5 Sus scrofa ENSSSCG00000017641 I 0.000
ENSSSCG00000012732 Sus scrofa ENSSSCG00000012732 I 0.000
Hsfy2 Rattus norvegicus ENSRNOG00000038569 I 0.000
HSF5 Pteropus vampyrus ENSPVAG00000002322 I 0.000
HSF5 Pan troglodytes ENSPTRG00000009453 I 0.000
ENSPPYG00000020808 Pongo abelii ENSPPYG00000020808 I 0.000
ENSPPYG00000008231 Pongo abelii ENSPPYG00000008231 I 0.000
ENSPFOG00000024243 Poecilia formosa ENSPFOG00000024243 I 0.000
HSF5 Procavia capensis ENSPCAG00000011323 I 0.000
ENSPANG00000004032 Papio anubis ENSPANG00000004032 I 0.000
ENSOGAG00000026441 Otolemur garnettii ENSOGAG00000026441 I 0.000
ENSTNIG00000019152 Tetraodon nigroviridis ENSTNIG00000019152 I 0.000
fgenesh2_pg.scaffold_315000002 Branchiostoma floridae fgenesh2_pg.scaffold_315000002 I 0.000
fgenesh2_pg.scaffold_142000054 Branchiostoma floridae fgenesh2_pg.scaffold_142000054 I 0.000
estExt_fgenesh2_pg.C_500047 Branchiostoma floridae estExt_fgenesh2_pg.C_500047 I 0.000
Pvit_11979 Pogona vitticeps Pvit_11979 I 0.000
Myotis_brandtii_HSFY1_10020625 Myotis brandtii Myotis_brandtii_HSFY1_10020625 I 0.000
ENSP00000359444 Macaca fascicularis ENSP00000359444 I 0.000
NEMVEDRAFT_v1g86916 Nematostella vectensis NEMVEDRAFT_v1g86916 I 0.000
maker-pag1_scaffold_1127-snap-gene-0.1 Pythium aphanidermatum maker-pag1_scaffold_1127-snap-gene-0.1 I 0.000
HSF5 Tursiops truncatus ENSTTRG00000006851 I 0.000
ENSTRUG00000017318 Takifugu rubripes ENSTRUG00000017318 I 0.000
ENSTRUG00000016913 Takifugu rubripes ENSTRUG00000016913 I 0.000
ENSTRUG00000015486 Takifugu rubripes ENSTRUG00000015486 I 0.000
ENSTRUG00000012122 Takifugu rubripes ENSTRUG00000012122 I 0.000
ENSTRUG00000010837 Takifugu rubripes ENSTRUG00000010837 I 0.000
ENSTRUG00000008763 Takifugu rubripes ENSTRUG00000008763 I 0.000
ENSTRUG00000004613 Takifugu rubripes ENSTRUG00000004613 I 0.000
HSF5 Oryctolagus cuniculus ENSOCUG00000009733 I 0.000
ENSOARG00000003920 Ovis aries ENSOARG00000003920 I 0.000
ENSAMEG00000014907 Ailuropoda melanoleuca ENSAMEG00000014907 I 0.000
ENSFALG00000014220 Ficedula albicollis ENSFALG00000014220 I 0.000
HSF5 Echinops telfairi ENSETEG00000014190 I 0.000
HSF5 Erinaceus europaeus ENSEEUG00000012375 I 0.000
ENSECAG00000009495 Equus caballus ENSECAG00000009495 I 0.000
ENSECAG00000008708 Equus caballus ENSECAG00000008708 I 0.000
ENSECAG00000008677 Equus caballus ENSECAG00000008677 I 0.000
HSF5 Dasypus novemcinctus ENSDNOG00000014871 I 0.000
hsf5 Danio rerio ENSDARG00000104686 I 0.000
ENSCSAG00000007182 Chlorocebus sabaeus ENSCSAG00000007182 I 0.000
HSF5 Cavia porcellus ENSCPOG00000003431 I 0.000
ENSCAFG00000029639 Canis familiaris ENSCAFG00000029639 I 0.000
ENSCAFG00000023067 Canis familiaris ENSCAFG00000023067 I 0.000
HSF5 Canis familiaris ENSCAFG00000017528 I 0.000
HSF5 Bos taurus ENSBTAG00000001166 I 0.000
HSFX1 Homo sapiens ENSG00000171116 I 0.000
ENSAMXG00000015946 Astyanax mexicanus ENSAMXG00000015946 I 0.000
HSFX2 Homo sapiens ENSG00000268738 I 0.000
ENSNLEG00000013483 Nomascus leucogenys ENSNLEG00000013483 I 0.000
Hsfy2 Mus musculus ENSMUSG00000045336 I 0.000
HSF5 Macaca mulatta ENSMMUG00000004184 I 0.000
ENSMMUG00000002887 Macaca mulatta ENSMMUG00000002887 I 0.000
ENSMLUG00000022730 Myotis lucifugus ENSMLUG00000022730 I 0.000
ENSMLUG00000015387 Myotis lucifugus ENSMLUG00000015387 I 0.000
HSF5 Myotis lucifugus ENSMLUG00000006132 I 0.000
ENSMEUG00000007286 Macropus eugenii ENSMEUG00000007286 I 0.000
ENSLOCG00000002988 Lepisosteus oculatus ENSLOCG00000002988 I 0.000
HSF5 Loxodonta africana ENSLAFG00000029785 I 0.000
ENSLACG00000015426 Latimeria chalumnae ENSLACG00000015426 I 0.000
ENSGMOG00000013287 Gadus morhua ENSGMOG00000013287 I 0.000
HSF5 Gorilla gorilla ENSGGOG00000013788 I 0.000
HSF5 Gallus gallus ENSGALG00000001031 I 0.000
ENSTNIG00000016643 Tetraodon nigroviridis ENSTNIG00000016643 N 0.000
ENSTNIG00000019520 Tetraodon nigroviridis ENSTNIG00000019520 N 0.000