ENSOARG00000020987 (Ovis aries)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSOARG00000020987 T318390_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RFX5
M03458_2.00
Homo sapiens
BGTTRCYATRGYAACV

BGTTRCYATRGYAACV
SELEX
Jolma et al.(2013)
RFX5_1
0.792 1.000
RFX5
M03459_2.00
Homo sapiens
BGTTGCYATGGYAACV

BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_2
0.792 1.000
RFX5
M03460_2.00
Homo sapiens
BGTTGCYATGGYAACV

BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_3
0.792 1.000
RFX5
M05725_2.00
Homo sapiens
BGTTRCYANGBGTTGCYRN

NYRGCAACVCNTRGYAACV
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1
0.792 1.000
RFX5
M05726_2.00
Homo sapiens
NYRVYAACSGTTRCYAN

NTRGYAACSGTTRBYRN
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2
0.792 1.000
RFX5
M08009_2.00
Homo sapiens
KCRBYDGTTRCYRRG

CYYRGYAACHRVYGM
ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford
0.792 1.000
RFX5
M08010_2.00
Homo sapiens
DBVBYDGTTGCYRGGBVRR

YYBVCCYRGCAACHRVBVH
ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford
0.792 1.000
RFX5
M08011_2.00
Homo sapiens
TCVBYDGTTDCYRDG

CHYRGHAACHRVBGA
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford
0.792 1.000
RFX5
M08012_2.00
Homo sapiens
YDGTTRCYRKGBVRV

BYBVCMYRGYAACHR
ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford
0.792 1.000
RFX5
M09364_2.00
Homo sapiens
VNNVBYDGTTGCYRKGNVRV

BYBNCMYRGCAACHRVBNNB
Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A
0.792 1.000
RFX5
M09629_2.00
Homo sapiens
NDGTTRCYADGV

BCHTRGYAACHN
Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477
0.792 1.000
RFX5
M11249_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_03
0.792 1.000
RFX5
M11250_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_05
0.792 1.000
RFX5
M05727_2.00
Homo sapiens
BGTYRYYRNGBGTTGYYRN

NYRRCAACVCNYRRYRACV
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1
0.792 1.000
RFX5
M05728_2.00
Homo sapiens
NTRGYAASSGTYRBYRN

NYRVYRACSSTTRCYAN
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2
0.792 1.000
Rfx7
M00823_2.00
Mus musculus
GTYRCYRNSB

VSNYRGYRAC
PBM
Weirauch et al.(2013)
pTH3516
0.710 0.620
Rfx7
M00187_2.00
Mus musculus
BGTHDYYRNN

NNYRRHDACV
PBM
Badis et al.(2009)
Rfxdc2_3516
0.710 0.620
RFX7
M05729_2.00
Homo sapiens
BGTTRCYRY

RYRGYAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX
0.710 0.620
RFX7
M05730_2.00
Homo sapiens
BGTTGCYRB

VYRGCAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX
0.710 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOARP00000022554 RFX 89 168

Links

Other RFX family TFs
Other Ovis aries TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nAv.1.0.1.g00656 Acanthocheilonema viteae nAv.1.0.1.g00656 N 0.000
Alligator_sinensis_CCG000427.1 Alligator sinensis Alligator_sinensis_CCG000427.1 N 0.000
ANCCAN_18993 Ancylostoma caninum ANCCAN_18993 N 0.000
ANCCEY_09797 Ancylostoma ceylanicum ANCCEY_09797 N 0.000
ANCDUO_16051 Ancylostoma duodenale ANCDUO_16051 N 0.000
ACAC_0000967001 Angiostrongylus cantonensis ACAC_0000967001 N 0.000
ACOC_0001090601 Angiostrongylus costaricensis ACOC_0001090601 N 0.000
ASIM_0000354801 Anisakis simplex ASIM_0000354801 N 0.000
ACUA011690 Anopheles culicifacies ACUA011690 N 0.000
AGAP000061 Anopheles gambiae AGAP000061 I 0.000
AMAM006920 Anopheles maculatus AMAM006920 N 0.000
ACEP10767 Atta cephalotes ACEP10767 N 0.000
BGLB010771 Biomphalaria glabrata BGLB010771 N 0.000
BGIBMGA013353 Bombyx mori BGIBMGA013353 N 0.000
gw.66.200.1 Branchiostoma floridae gw.66.200.1 N 0.000
Bm2283 Brugia malayi Bm2283 N 0.000
BTMF_0001093101 Brugia timori BTMF_0001093101 N 0.000
BTMF_0000416401 Brugia timori BTMF_0000416401 N 0.000
Cflo_07825--XP_624996.2_APIME Camponotus floridanus Cflo_07825--XP_624996.2_APIME N 0.000
ONECUT3 Canis familiaris ENSCAFG00000019469 N 0.000
Cmyd_10014202 Chelonia mydas Cmyd_10014202 N 0.000
Cmyd_10009028 Chelonia mydas Cmyd_10009028 N 0.000
Cmyd_10006709 Chelonia mydas Cmyd_10006709 N 0.000
CLEC007920 Cimex lectularius CLEC007920 N 0.000
DILT_0001945601 Diphyllobothrium latum DILT_0001945601 N 0.000
ENSDORG00000002300 Dipodomys ordii ENSDORG00000002300 N 0.000
DME_0000267401 Dracunculus medinensis DME_0000267401 N 0.000
GD24376 Drosophila simulans FBgn0195717 N 0.000
ECPE_0000369101 Echinostoma caproni ECPE_0000369101 N 0.000
EEL_0001075201 Elaeophora elaphi EEL_0001075201 N 0.000
EVEC_0000948201 Enterobius vermicularis EVEC_0000948201 N 0.000
ENSGMOG00000012508 Gadus morhua ENSGMOG00000012508 N 0.000
GPUH_0000805401 Gongylonema pulchrum GPUH_0000805401 N 0.000
GPUH_0001951401 Gongylonema pulchrum GPUH_0001951401 N 0.000
HPLM_0000364001 Haemonchus placei HPLM_0000364001 N 0.000
HHAL003723-PA Halyomorpha halys HHAL003723-PA N 0.000
ISCW015628 Ixodes scapularis ISCW015628 N 0.000
ENSLACG00000003028 Latimeria chalumnae ENSLACG00000003028 N 0.000
LDEC016076 Leptinotarsa decemlineata LDEC016076 N 0.000
LCUP017328 Lucilia cuprina LCUP017328 N 0.000
MCINX014974 Melitaea cinxia MCINX014974 N 0.000
MCOS_0000769501 Mesocestoides corti MCOS_0000769501 N 0.000
Myotis_brandtii_Onecut1_10025993 Myotis brandtii Myotis_brandtii_Onecut1_10025993 N 0.000
NECAME_16148 Necator americanus NECAME_16148 N 0.000
NBR_0001501501 Nippostrongylus brasiliensis NBR_0001501501 N 0.000
Ocbimv22034219m.g Octopus bimaculoides Ocbimv22034219m.g N 0.000
OESDEN_04593 Oesophagostomum dentatum OESDEN_04593 N 0.000
SNAPOd2T00024998001 Oikopleura dioica SNAPOd2T00024998001 N 0.000
OFLC_0001427401 Onchocerca flexuosa OFLC_0001427401 N 0.000
nOo.2.0.1.g07179 Onchocerca ochengi nOo.2.0.1.g07179 N 0.000
nOo.2.0.1.g05355 Onchocerca ochengi nOo.2.0.1.g05355 N 0.000
WBGene00240888 Onchocerca volvulus WBGene00240888 N 0.000
Ogr15245 Ophisaurus gracilis Ogr15245 N 0.000
ENSOANG00000004576 Ornithorhynchus anatinus ENSOANG00000004576 N 0.000
ONECUT1 Pan troglodytes ENSPTRG00000007090 I 0.000
ENSPMAG00000007938 Petromyzon marinus ENSPMAG00000007938 N 0.000
scaffold144-EXSNAP2012.47 Pristionchus exspectatus scaffold144-EXSNAP2012.47 N 0.000
PPA07282 Pristionchus pacificus PPA07282 N 0.000
PXEA_0001210701 Protopolystoma xenopodis PXEA_0001210701 N 0.000
RPRC001057 Rhodnius prolixus RPRC001057 N 0.000
nRc.2.0.1.g06026 Romanomermis culicivorax nRc.2.0.1.g06026 N 0.000
ENSSHAG00000018152 Sarcophilus harrisii ENSSHAG00000018152 I 0.000
ENSSHAG00000014706 Sarcophilus harrisii ENSSHAG00000014706 N 0.000
SMRZ_0001320201 Schistosoma margrebowiei SMRZ_0001320201 N 0.000
SMTD_0000822401 Schistosoma mattheei SMTD_0000822401 N 0.000
SROB_0001256401 Schistosoma rodhaini SROB_0001256401 N 0.000
SINV23673 Solenopsis invicta SINV23673 N 0.000
L889_g23716 Steinernema feltiae L889_g23716 I 0.000
L898_g28854 Steinernema monticolum L898_g28854 I 0.000
L892_g9685 Steinernema scapterisci L892_g9685 N 0.000
SVUK_0000254701 Strongylus vulgaris SVUK_0000254701 N 0.000
ONECUT2 Sus scrofa ENSSSCG00000004540 N 0.000
SMUV_0001096901 Syphacia muris SMUV_0001096901 N 0.000
ENSTRUG00000003652 Takifugu rubripes ENSTRUG00000003652 N 0.000
onecut1 Takifugu rubripes ENSTRUG00000000994 N 0.000
TELCIR_11781 Teladorsagia circumcincta TELCIR_11781 N 0.000
ENSTNIG00000003240 Tetraodon nigroviridis ENSTNIG00000003240 N 0.000
D917_03504 Trichinella nativa D917_03504 N 0.000
EFV46387 Trichinella spiralis EFV46387 N 0.000
EFV55311 Trichinella spiralis EFV55311 N 0.000
D918_08254 Trichuris suis D918_08254 N 0.000
onecut2 Xenopus tropicalis XB-GENE-485246 N 0.000
ENSXMAG00000012192 Xiphophorus maculatus ENSXMAG00000012192 N 0.000
L798_07541 Zootermopsis nevadensis L798_07541 N 0.000