ENSORLG00000001269 (Oryzias latipes)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSORLG00000001269 T318420_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RFX5
M03458_2.00
Homo sapiens
BGTTRCYATRGYAACV

BGTTRCYATRGYAACV
SELEX
Jolma et al.(2013)
RFX5_1
0.736 0.747
RFX5
M03459_2.00
Homo sapiens
BGTTGCYATGGYAACV

BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_2
0.736 0.747
RFX5
M03460_2.00
Homo sapiens
BGTTGCYATGGYAACV

BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_3
0.736 0.747
RFX5
M05725_2.00
Homo sapiens
BGTTRCYANGBGTTGCYRN

NYRGCAACVCNTRGYAACV
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1
0.736 0.747
RFX5
M05726_2.00
Homo sapiens
NYRVYAACSGTTRCYAN

NTRGYAACSGTTRBYRN
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2
0.736 0.747
RFX5
M08009_2.00
Homo sapiens
KCRBYDGTTRCYRRG

CYYRGYAACHRVYGM
ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford
0.736 0.747
RFX5
M08010_2.00
Homo sapiens
DBVBYDGTTGCYRGGBVRR

YYBVCCYRGCAACHRVBVH
ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford
0.736 0.747
RFX5
M08011_2.00
Homo sapiens
TCVBYDGTTDCYRDG

CHYRGHAACHRVBGA
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford
0.736 0.747
RFX5
M08012_2.00
Homo sapiens
YDGTTRCYRKGBVRV

BYBVCMYRGYAACHR
ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford
0.736 0.747
RFX5
M09364_2.00
Homo sapiens
VNNVBYDGTTGCYRKGNVRV

BYBNCMYRGCAACHRVBNNB
Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A
0.736 0.747
RFX5
M09629_2.00
Homo sapiens
NDGTTRCYADGV

BCHTRGYAACHN
Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477
0.736 0.747
RFX5
M11249_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_03
0.736 0.747
RFX5
M11250_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_05
0.736 0.747
RFX5
M05727_2.00
Homo sapiens
BGTYRYYRNGBGTTGYYRN

NYRRCAACVCNYRRYRACV
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1
0.736 0.747
RFX5
M05728_2.00
Homo sapiens
NTRGYAASSGTYRBYRN

NYRVYRACSSTTRCYAN
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2
0.736 0.747
Rfx7
M00823_2.00
Mus musculus
GTYRCYRNSB

VSNYRGYRAC
PBM
Weirauch et al.(2013)
pTH3516
0.714 0.646
Rfx7
M00187_2.00
Mus musculus
BGTHDYYRNN

NNYRRHDACV
PBM
Badis et al.(2009)
Rfxdc2_3516
0.714 0.646
RFX7
M05729_2.00
Homo sapiens
BGTTRCYRY

RYRGYAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX
0.714 0.646
RFX7
M05730_2.00
Homo sapiens
BGTTGCYRB

VYRGCAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX
0.714 0.646
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000001557 RFX 92 173

Links

Other RFX family TFs
Other Oryzias latipes TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL013752 Aedes aegypti AAEL013752 I 0.672
AALB008384 Anopheles albimanus AALB008384 I 0.675
Aan_R010941 Calypte anna Aan_R010941 I 0.746
Aan_R011989 Calypte anna Aan_R011989 I 0.708
AARA004226 Anopheles arabiensis AARA004226 I 0.675
AATE016751 Anopheles atroparvus AATE016751 I 0.675
ACEP24602 Atta cephalotes ACEP24602 I 0.681
ACHR008891 Anopheles christyi ACHR008891 I 0.675
ACOM036649 Anopheles coluzzii ACOM036649 I 0.675
ACUA017169 Anopheles culicifacies ACUA017169 I 0.675
ADAC008404 Anopheles darlingi ADAC008404 I 0.675
ADIR010232 Anopheles dirus ADIR010232 I 0.675
AEPI006624 Anopheles epiroticus AEPI006624 I 0.675
AFAF011654 Anopheles farauti AFAF011654 I 0.675
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.757
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.708
AFUN011072 Anopheles funestus AFUN011072 I 0.675
AGAP013226 Anopheles gambiae AGAP013226 I 0.675
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.700
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.754
AMAG_10999 Allomyces macrogynus AMAG_10999 I 0.656
AMAG_11601 Allomyces macrogynus AMAG_11601 I 0.656
AMEC002251 Anopheles melas AMEC002251 I 0.675
AMEM009524 Anopheles merus AMEM009524 I 0.675
AMIN003942 Anopheles minimus AMIN003942 I 0.675
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.675
ASIS020285 Anopheles sinensis ASIS020285 I 0.675
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.675
A_01977 Schistosoma haematobium A_01977 I 0.694
BDDG_02784 Blastomyces dermatitidis BDDG_02784 I 0.651
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.667
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.700
CAOG_00356 Capsaspora owczarzaki CAOG_00356 I 0.651
CapteG131555 Capitella teleta CapteG131555 I 0.694
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.666
CG9727 Drosophila melanogaster FBgn0037445 I 0.675
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.681
CLEC011984 Cimex lectularius CLEC011984 I 0.674
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.684
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.657
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.672
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.672
csin102559 Clonorchis sinensis csin102559 I 0.705
D915_00887 Fasciola hepatica D915_00887 I 0.656
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.684
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.694
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.655
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.694
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.747
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.747
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.714
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.776
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.718
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.718
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.691
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.714
ENSCING00000022532 Ciona intestinalis ENSCING00000022532 I 0.652
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.714
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.736
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.736
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.714
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.736
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.759
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.714
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.714
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.718
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.714
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.777
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.719
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.662
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.737
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.754
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.736
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.708
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.714
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.736
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.714
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.736
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.710
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.736
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.736
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.781
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.699
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.718
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.736
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.736
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.709
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.736
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.714
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.699
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.783
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.719
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.736
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.714
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.714
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.742
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.714
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.737
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.664
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.738
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.781
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.714
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.669
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.699
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.718
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.783
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.705
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.675
GB49419 Apis mellifera GB49419 I 0.681
GD19544 Drosophila simulans FBgn0191039 I 0.675
GE24099 Drosophila yakuba FBgn0241238 I 0.675
GF16654 Drosophila ananassae FBgn0093675 I 0.675
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.759
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.708
GG10435 Drosophila erecta FBgn0102744 I 0.675
GH18082 Drosophila grimshawi FBgn0125550 I 0.676
GI24583 Drosophila mojavensis FBgn0147305 I 0.675
GJ22650 Drosophila virilis FBgn0209754 I 0.675
GK13786 Drosophila willistoni FBgn0215794 I 0.675
GL22063 Drosophila persimilis FBgn0159655 I 0.675
GM10553 Drosophila sechellia FBgn0165499 I 0.675
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.698
HMEL011744 Heliconius melpomene HMEL011744 I 0.678
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.698
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.700
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.681
ISCW001129 Ixodes scapularis ISCW001129 I 0.661
KGM_16732 Danaus plexippus KGM_16732 I 0.677
L798_03377 Zootermopsis nevadensis L798_03377 I 0.679
LCUP014592 Lucilia cuprina LCUP014592 I 0.676
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.688
LotgiG138119 Lottia gigantea LotgiG138119 I 0.688
MCINX003210 Melitaea cinxia MCINX003210 I 0.678
MDOA009335 Musca domestica MDOA009335 I 0.677
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.747
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.706
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.694
NV23037 Nasonia vitripennis NV23037 I 0.678
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.705
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.660
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.739
PHUM035280 Pediculus humanus PHUM035280 I 0.685
PTSG_01032 Salpingoeca rosetta PTSG_01032 I 0.652
PTSG_12063 Salpingoeca rosetta PTSG_12063 I 0.652
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.747
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.706
Rfx5 Mus musculus ENSMUSG00000005774 I 0.736
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.747
RFX5 Gallus gallus ENSGALG00000000836 I 0.759
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.736
RFX5 Equus caballus ENSECAG00000024774 I 0.736
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.762
RFX5 Felis catus ENSFCAG00000005568 I 0.736
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.673
RFX5 Homo sapiens ENSG00000143390 D 0.736
RFX5 Canis familiaris ENSCAFG00000012661 I 0.736
RFX5 Echinops telfairi ENSETEG00000013503 I 0.736
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.736
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.732
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.736
RFX5 Bos taurus ENSBTAG00000017580 I 0.736
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.736
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.736
RFX5 Procavia capensis ENSPCAG00000011056 I 0.753
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.736
RFX5 Sorex araneus ENSSARG00000000750 I 0.736
rfx5 Danio rerio ENSDARG00000063258 I 0.778
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.736
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.732
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.736
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.736
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.781
RFX5 Dasypus novemcinctus ENSDNOG00000035113 I 0.663
RFX5 Sus scrofa ENSSSCG00000006625 I 0.736
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.748
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.700
RFX7 Bos taurus ENSBTAG00000000565 I 0.714
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.714
RFX7 Danio rerio ENSDARG00000103691 I 0.718
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.714
RFX7 Canis familiaris ENSCAFG00000016029 I 0.714
rfx7 Danio rerio ENSDARG00000077237 I 0.713
RFX7 Echinops telfairi ENSETEG00000015037 I 0.697
RFX7 Equus caballus ENSECAG00000002379 I 0.708
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.713
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.714
RFX7 Felis catus ENSFCAG00000029408 I 0.708
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.708
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.663
RFX7 Oryzias latipes ENSORLG00000005342 I 0.718
rfx7 Oryzias latipes ENSORLG00000008583 I 0.704
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.714
RFX7 Procavia capensis ENSPCAG00000004974 I 0.714
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.714
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.714
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.714
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.714
RFX7 Sorex araneus ENSSARG00000010801 I 0.708
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.695
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.712
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.712
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.694
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.710
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.714
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.653
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.708
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.714
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.709
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.718
RFX7 Homo sapiens ENSG00000181827 D 0.714
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.708
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.714
Rfx7 Mus musculus ENSMUSG00000037674 D 0.714
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.714
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.712
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.656
SINV24627 Solenopsis invicta SINV24627 I 0.681
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.684
Smp_040350 Schistosoma mansoni Smp_040350 I 0.694
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.706
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.706
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.684
T265_11740 Opisthorchis viverrini T265_11740 I 0.705
TC008959 Tribolium castaneum TC008959 I 0.684
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.671
TsM_000553100 Taenia solium TsM_000553100 I 0.695
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.695
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.677