ENSPMAG00000005066 (Petromyzon marinus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSPMAG00000005066 T318454_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Rfx7
M00823_2.00
Mus musculus
GTYRCYRNSB

VSNYRGYRAC
PBM
Weirauch et al.(2013)
pTH3516
0.766 0.848
Rfx7
M00187_2.00
Mus musculus
BGTHDYYRNN

NNYRRHDACV
PBM
Badis et al.(2009)
Rfxdc2_3516
0.766 0.848
RFX7
M05729_2.00
Homo sapiens
BGTTRCYRY

RYRGYAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX
0.766 0.848
RFX7
M05730_2.00
Homo sapiens
BGTTGCYRB

VYRGCAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX
0.766 0.848
RFX5
M03458_2.00
Homo sapiens
BGTTRCYATRGYAACV

BGTTRCYATRGYAACV
SELEX
Jolma et al.(2013)
RFX5_1
0.711 0.633
RFX5
M03459_2.00
Homo sapiens
BGTTGCYATGGYAACV

BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_2
0.711 0.633
RFX5
M03460_2.00
Homo sapiens
BGTTGCYATGGYAACV

BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_3
0.711 0.633
RFX5
M05725_2.00
Homo sapiens
BGTTRCYANGBGTTGCYRN

NYRGCAACVCNTRGYAACV
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1
0.711 0.633
RFX5
M05726_2.00
Homo sapiens
NYRVYAACSGTTRCYAN

NTRGYAACSGTTRBYRN
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2
0.711 0.633
RFX5
M08009_2.00
Homo sapiens
KCRBYDGTTRCYRRG

CYYRGYAACHRVYGM
ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford
0.711 0.633
RFX5
M08010_2.00
Homo sapiens
DBVBYDGTTGCYRGGBVRR

YYBVCCYRGCAACHRVBVH
ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford
0.711 0.633
RFX5
M08011_2.00
Homo sapiens
TCVBYDGTTDCYRDG

CHYRGHAACHRVBGA
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford
0.711 0.633
RFX5
M08012_2.00
Homo sapiens
YDGTTRCYRKGBVRV

BYBVCMYRGYAACHR
ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford
0.711 0.633
RFX5
M09364_2.00
Homo sapiens
VNNVBYDGTTGCYRKGNVRV

BYBNCMYRGCAACHRVBNNB
Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A
0.711 0.633
RFX5
M09629_2.00
Homo sapiens
NDGTTRCYADGV

BCHTRGYAACHN
Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477
0.711 0.633
RFX5
M11249_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_03
0.711 0.633
RFX5
M11250_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_05
0.711 0.633
RFX5
M05727_2.00
Homo sapiens
BGTYRYYRNGBGTTGYYRN

NYRRCAACVCNYRRYRACV
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1
0.711 0.633
RFX5
M05728_2.00
Homo sapiens
NTRGYAASSGTYRBYRN

NYRVYRACSSTTRCYAN
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2
0.711 0.633
daf-19
M00709_2.00
Caenorhabditis elegans
SGTTRCTADG

CHTAGYAACS
PBM
Narasimhan et al.(2015)
pTH10021
0.652 0.456
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPMAP00000005548 RFX 13 93

Links

Other RFX family TFs
Other Petromyzon marinus TFs

269 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30148.m001412 Ricinus communis 30148.m001412 N 0.000
AMTR_s00011p00258380 Amborella trichopoda AMTR_s00011p00258380 N 0.000
Aquca_013_00876 Aquilegia coerulea Aquca_013_00876 N 0.000
BGIOSGA015860 Oryza indica BGIOSGA015860 N 0.000
Bo5g009070 Brassica oleracea Bo5g009070 N 0.000
Bostr.25219s0090 Boechera stricta Bostr.25219s0090 N 0.000
Bra018617 Brassica rapa Bra018617 N 0.000
Bra030732 Brassica rapa Bra030732 N 0.000
Cagra.4395s0044 Capsella grandiflora Cagra.4395s0044 N 0.000
Carubv10008711m.g Capsella rubella Carubv10008711m.g N 0.000
cassava14033.valid.m1 Manihot esculenta cassava14033.valid.m1 N 0.000
Ca_04693 Cicer arietinum Ca_04693 N 0.000
chr1.CM0017.250.nc Lotus japonicus chr1.CM0017.250.nc N 0.000
Ciclev10030998m.g Citrus clementina Ciclev10030998m.g N 0.000
Cla007091 Citrullus lanatus Cla007091 N 0.000
Cucsa.362600 Cucumis sativus Cucsa.362600 N 0.000
estExt_fgenesh1_pg.C_280046 Physcomitrella patens estExt_fgenesh1_pg.C_280046 N 0.000
estExt_Genewise1.C_340313 Physcomitrella patens estExt_Genewise1.C_340313 N 0.000
Eucgr.D01094 Eucalyptus grandis Eucgr.D01094 N 0.000
evm.TU.supercontig_73.29 Carica papaya evm.TU.supercontig_73.29 N 0.000
gene17946-v1.0-hybrid Fragaria vesca gene17946-v1.0-hybrid N 0.000
GLYMA04G00330 Glycine max GLYMA04G00330 N 0.000
Gorai.004G253700 Gossypium raimondii Gorai.004G253700 N 0.000
Gorai.007G347300 Gossypium raimondii Gorai.007G347300 N 0.000
GSMUA_Achr7G04860_001 Musa acuminata GSMUA_Achr7G04860_001 N 0.000
GSMUA_Achr7G17330_001 Musa acuminata GSMUA_Achr7G17330_001 N 0.000
LPERR11G10050 Leersia perrieri LPERR11G10050 N 0.000
Lus10001339.g Linum usitatissimum Lus10001339.g N 0.000
Lus10005668.g Linum usitatissimum Lus10005668.g N 0.000
Lus10013642.g Linum usitatissimum Lus10013642.g N 0.000
Lus10020325.g Linum usitatissimum Lus10020325.g N 0.000
MDP0000157652 Malus domestica MDP0000157652 N 0.000
mgf015824m Mimulus guttatus mgf015824m N 0.000
MTR_3g118290 Medicago truncatula MTR_3g118290 N 0.000
OB11G19800 Oryza brachyantha OB11G19800 N 0.000
OGLUM11G12180 Oryza glumaepatula OGLUM11G12180 N 0.000
OLONG_012202 Oryza longistaminata OLONG_012202 N 0.000
orange1.1g007404m.g Citrus sinensis orange1.1g007404m.g N 0.000
ORGLA11G0105900 Oryza glaberrima ORGLA11G0105900 N 0.000
ORUFI11G13080 Oryza rufipogon ORUFI11G13080 N 0.000
OS11G0448400 Oryza sativa OS11G0448400 N 0.000
Pavir.Hb00670 Panicum virgatum Pavir.Hb00670 N 0.000
Pavir.Ia03759 Panicum virgatum Pavir.Ia03759 N 0.000
Pavir.J05262 Panicum virgatum Pavir.J05262 N 0.000
PGSC0003DMG400031111 Solanum tuberosum PGSC0003DMG400031111 N 0.000
Pm025497 Prunus mume Pm025497 N 0.000
POPTR_0013s06770 Populus trichocarpa POPTR_0013s06770 N 0.000
POPTR_0019s06100 Populus trichocarpa POPTR_0019s06100 N 0.000
PRUPE_ppa006657mg Prunus persica PRUPE_ppa006657mg N 0.000
SapurV1A.0671s0070 Salix purpurea SapurV1A.0671s0070 N 0.000
SapurV1A.1189s0050 Salix purpurea SapurV1A.1189s0050 N 0.000
SapurV1A.1953s0020 Salix purpurea SapurV1A.1953s0020 N 0.000
Sb0010s016080 Sorghum bicolor Sb0010s016080 N 0.000
Si026193m.g Setaria italica Si026193m.g N 0.000
SIGB Vitis vinifera VIT_15s0024g00640 N 0.000
SIGB Arabidopsis thaliana AT1G08540 N 0.000
SIGB Arabidopsis lyrata fgenesh2_kg.1__869__AT1G08540.1 N 0.000
Solyc01g081490.2 Solanum lycopersicum Solyc01g081490.2 N 0.000
TCM_025741 Theobroma cacao TCM_025741 N 0.000
Thhalv10007187m.g Eutrema salsugineum Thhalv10007187m.g N 0.000