ENSSSCG00000024042 (Sus scrofa)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSSSCG00000024042 T318512_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.695 1.000
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.695 1.000
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.695 1.000
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.695 1.000
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.666 0.633
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.666 0.633
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.666 0.633
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.666 0.633
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.666 0.633
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.666 0.633
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.666 0.633
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.666 0.633
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.666 0.633
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.666 0.633
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.666 0.633
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.666 0.633
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.666 0.633
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.666 0.633
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.666 0.633
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000025446 RFX 47 76

Links

Other RFX family TFs
Other Sus scrofa TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.695
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.695
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.695
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.695
Rfx7 Mus musculus ENSMUSG00000037674 D 0.695
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.695
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.695
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.695
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.695
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.695
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.695
RFX7 Homo sapiens ENSG00000181827 D 0.695
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.695
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.695
RFX7 Sorex araneus ENSSARG00000010801 I 0.695
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.695
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.695
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.695
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.695
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.695
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.695
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.695
RFX7 Procavia capensis ENSPCAG00000004974 I 0.695
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.695
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.695
RFX7 Equus caballus ENSECAG00000002379 I 0.695
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.695
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.695
RFX7 Canis familiaris ENSCAFG00000016029 I 0.695
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.695
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.695
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.695
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.695
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.695
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.695
RFX7 Bos taurus ENSBTAG00000000565 I 0.695
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.695
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.695
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.695
Aan_R011989 Calypte anna Aan_R011989 I 0.695
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.695
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.695
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.695
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.694
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.694
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.693
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.693
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.693
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.692
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.692
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.692
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.692
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.692
rfx7 Danio rerio ENSDARG00000077237 I 0.691
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.691
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.690
RFX7 Oryzias latipes ENSORLG00000005342 I 0.689
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.689
RFX7 Felis catus ENSFCAG00000029408 I 0.689
RFX7 Danio rerio ENSDARG00000103691 I 0.689
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.689
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.689
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.689
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.689
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.687
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.686
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.686
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.685
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.683
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.682
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.681
rfx7 Oryzias latipes ENSORLG00000008583 I 0.680
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.680
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.680
RFX7 Echinops telfairi ENSETEG00000015037 I 0.680
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.674
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.671
csin102559 Clonorchis sinensis csin102559 I 0.670
T265_11740 Opisthorchis viverrini T265_11740 I 0.670
RFX5 Felis catus ENSFCAG00000005568 I 0.666
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.666
RFX5 Homo sapiens ENSG00000143390 D 0.666
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.666
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.666
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.666
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.666
RFX5 Sus scrofa ENSSSCG00000006625 I 0.666
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.666
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.666
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.666
RFX5 Bos taurus ENSBTAG00000017580 I 0.666
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.666
RFX5 Canis familiaris ENSCAFG00000012661 I 0.666
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.666
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.666
rfx5 Danio rerio ENSDARG00000063258 I 0.666
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.666
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.666
RFX5 Echinops telfairi ENSETEG00000013503 I 0.666
RFX5 Equus caballus ENSECAG00000024774 I 0.666
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.666
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.666
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.666
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.666
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.666
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.666
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.666
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.666
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.666
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.666
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.666
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.666
RFX5 Sorex araneus ENSSARG00000000750 I 0.666
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.666
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.665
Rfx5 Mus musculus ENSMUSG00000005774 I 0.665
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.665
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.665
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.665
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.665
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.665
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.664
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.664
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.664
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.664
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.664
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.664
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.664
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.663
RFX5 Gallus gallus ENSGALG00000000836 I 0.663
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.663
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.663
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.663
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.663
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.663
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.663
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.663
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.663
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.662
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.662
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.662
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.661
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.661
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.661
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.661
RFX5 Procavia capensis ENSPCAG00000011056 I 0.661
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.661
Aan_R010941 Calypte anna Aan_R010941 I 0.660
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.660
D915_00887 Fasciola hepatica D915_00887 I 0.659
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.659
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.659
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.659
A_01977 Schistosoma haematobium A_01977 I 0.659
Smp_040350 Schistosoma mansoni Smp_040350 I 0.659
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.659
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.659
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.659
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.659
TsM_000553100 Taenia solium TsM_000553100 I 0.656
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.656
LotgiG138119 Lottia gigantea LotgiG138119 I 0.656
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.656
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.656
CapteG131555 Capitella teleta CapteG131555 I 0.655
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.654
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.653
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.652
ISCW001129 Ixodes scapularis ISCW001129 I 0.652