CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSSSCG00000024042
(
Sus scrofa
)
RFX
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02257 (RFX_DNA_binding)
IPR003150
ENSSSCG00000024042
T318512_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Rfx7
M00823_2.00
Mus musculus
GTYRCYRNSB
VSNYRGYRAC
PBM
Weirauch et al.(2013)
pTH3516
0.695
1.000
Rfx7
M00187_2.00
Mus musculus
BGTHDYYRNN
NNYRRHDACV
PBM
Badis et al.(2009)
Rfxdc2_3516
0.695
1.000
RFX7
M05729_2.00
Homo sapiens
BGTTRCYRY
RYRGYAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX
0.695
1.000
RFX7
M05730_2.00
Homo sapiens
BGTTGCYRB
VYRGCAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX
0.695
1.000
RFX5
M03458_2.00
Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV
SELEX
Jolma et al.(2013)
RFX5_1
0.666
0.633
RFX5
M03459_2.00
Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_2
0.666
0.633
RFX5
M03460_2.00
Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_3
0.666
0.633
RFX5
M05725_2.00
Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1
0.666
0.633
RFX5
M05726_2.00
Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2
0.666
0.633
RFX5
M08009_2.00
Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM
ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford
0.666
0.633
RFX5
M08010_2.00
Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH
ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford
0.666
0.633
RFX5
M08011_2.00
Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford
0.666
0.633
RFX5
M08012_2.00
Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR
ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford
0.666
0.633
RFX5
M09364_2.00
Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB
Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A
0.666
0.633
RFX5
M09629_2.00
Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN
Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477
0.666
0.633
RFX5
M11249_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_03
0.666
0.633
RFX5
M11250_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_05
0.666
0.633
RFX5
M05727_2.00
Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1
0.666
0.633
RFX5
M05728_2.00
Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2
0.666
0.633
For this family, TFs with SR scores >
0.650
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000025446
RFX
47
76
QMHAFSWIRNTLEEHPETSLPKQEVYDEYK
Links
Other
RFX
family TFs
Other
Sus scrofa
TFs
169 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy