ENSTSYG00000003230 (Tarsius syrichta)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSTSYG00000003230 T318552_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RFX5
M03458_2.00
Homo sapiens
BGTTRCYATRGYAACV

BGTTRCYATRGYAACV
SELEX
Jolma et al.(2013)
RFX5_1
0.700 0.967
RFX5
M03459_2.00
Homo sapiens
BGTTGCYATGGYAACV

BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_2
0.700 0.967
RFX5
M03460_2.00
Homo sapiens
BGTTGCYATGGYAACV

BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_3
0.700 0.967
RFX5
M05725_2.00
Homo sapiens
BGTTRCYANGBGTTGCYRN

NYRGCAACVCNTRGYAACV
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1
0.700 0.967
RFX5
M05726_2.00
Homo sapiens
NYRVYAACSGTTRCYAN

NTRGYAACSGTTRBYRN
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2
0.700 0.967
RFX5
M08009_2.00
Homo sapiens
KCRBYDGTTRCYRRG

CYYRGYAACHRVYGM
ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford
0.700 0.967
RFX5
M08010_2.00
Homo sapiens
DBVBYDGTTGCYRGGBVRR

YYBVCCYRGCAACHRVBVH
ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford
0.700 0.967
RFX5
M08011_2.00
Homo sapiens
TCVBYDGTTDCYRDG

CHYRGHAACHRVBGA
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford
0.700 0.967
RFX5
M08012_2.00
Homo sapiens
YDGTTRCYRKGBVRV

BYBVCMYRGYAACHR
ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford
0.700 0.967
RFX5
M09364_2.00
Homo sapiens
VNNVBYDGTTGCYRKGNVRV

BYBNCMYRGCAACHRVBNNB
Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A
0.700 0.967
RFX5
M09629_2.00
Homo sapiens
NDGTTRCYADGV

BCHTRGYAACHN
Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477
0.700 0.967
RFX5
M11249_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_03
0.700 0.967
RFX5
M11250_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_05
0.700 0.967
RFX5
M05727_2.00
Homo sapiens
BGTYRYYRNGBGTTGYYRN

NYRRCAACVCNYRRYRACV
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1
0.700 0.967
RFX5
M05728_2.00
Homo sapiens
NTRGYAASSGTYRBYRN

NYRVYRACSSTTRCYAN
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2
0.700 0.967
Rfx7
M00823_2.00
Mus musculus
GTYRCYRNSB

VSNYRGYRAC
PBM
Weirauch et al.(2013)
pTH3516
0.665 0.600
Rfx7
M00187_2.00
Mus musculus
BGTHDYYRNN

NNYRRHDACV
PBM
Badis et al.(2009)
Rfxdc2_3516
0.665 0.600
RFX7
M05729_2.00
Homo sapiens
BGTTRCYRY

RYRGYAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX
0.665 0.600
RFX7
M05730_2.00
Homo sapiens
BGTTGCYRB

VYRGCAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX
0.665 0.600
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTSYP00000002961 RFX 39 76

Links

Other RFX family TFs
Other Tarsius syrichta TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R010941 Calypte anna Aan_R010941 I 0.683
Aan_R011989 Calypte anna Aan_R011989 I 0.665
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.686
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.665
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.665
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.680
A_01977 Schistosoma haematobium A_01977 I 0.660
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.665
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.663
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.677
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.665
csin102559 Clonorchis sinensis csin102559 I 0.671
D915_00887 Fasciola hepatica D915_00887 I 0.659
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.660
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.660
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.660
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.669
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.691
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.665
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.667
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.671
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.670
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.686
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.665
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.665
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.700
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.700
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.665
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.700
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.680
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.665
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.666
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.671
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.665
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.667
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.670
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.664
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.696
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.685
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.700
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.665
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.665
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.700
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.665
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.700
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.665
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.700
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.700
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.667
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.663
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.671
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.669
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.700
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.700
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.665
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.700
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.665
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.659
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.668
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.667
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.700
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.665
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.665
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.674
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.665
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.696
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.665
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.700
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.668
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.665
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.656
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.671
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.668
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.652
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.680
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.665
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.657
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.657
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.658
ISCW001129 Ixodes scapularis ISCW001129 I 0.654
LotgiG138119 Lottia gigantea LotgiG138119 I 0.650
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.690
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.664
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.661
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.665
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.671
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.669
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.665
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.673
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.696
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.700
rfx5 Danio rerio ENSDARG00000063258 I 0.667
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.700
RFX5 Bos taurus ENSBTAG00000017580 I 0.700
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.696
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.700
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.680
RFX5 Equus caballus ENSECAG00000024774 I 0.700
RFX5 Canis familiaris ENSCAFG00000012661 I 0.700
RFX5 Echinops telfairi ENSETEG00000013503 I 0.699
RFX5 Felis catus ENSFCAG00000005568 I 0.700
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.668
RFX5 Sus scrofa ENSSSCG00000006625 I 0.700
RFX5 Procavia capensis ENSPCAG00000011056 I 0.691
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.690
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.700
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.700
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.700
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.698
RFX5 Gallus gallus ENSGALG00000000836 I 0.685
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.700
RFX5 Homo sapiens ENSG00000143390 D 0.700
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.700
Rfx5 Mus musculus ENSMUSG00000005774 I 0.698
RFX5 Sorex araneus ENSSARG00000000750 I 0.699
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.680
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.660
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.656
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.671
RFX7 Oryzias latipes ENSORLG00000005342 I 0.671
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.665
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.665
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.665
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.665
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.665
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.665
RFX7 Bos taurus ENSBTAG00000000565 I 0.665
Rfx7 Mus musculus ENSMUSG00000037674 D 0.665
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.664
RFX7 Canis familiaris ENSCAFG00000016029 I 0.665
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.665
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.664
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.665
rfx7 Oryzias latipes ENSORLG00000008583 I 0.660
rfx7 Danio rerio ENSDARG00000077237 I 0.670
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.665
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.664
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.665
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.667
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.661
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.665
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.671
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.657
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.665
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.664
RFX7 Sorex araneus ENSSARG00000010801 I 0.665
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.671
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.665
RFX7 Procavia capensis ENSPCAG00000004974 I 0.665
RFX7 Echinops telfairi ENSETEG00000015037 I 0.650
RFX7 Equus caballus ENSECAG00000002379 I 0.665
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.665
RFX7 Danio rerio ENSDARG00000103691 I 0.671
RFX7 Felis catus ENSFCAG00000029408 I 0.666
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.665
RFX7 Homo sapiens ENSG00000181827 D 0.665
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.660
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.660
Smp_040350 Schistosoma mansoni Smp_040350 I 0.660
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.652
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.651
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.660
T265_11740 Opisthorchis viverrini T265_11740 I 0.671
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.652
TsM_000553100 Taenia solium TsM_000553100 I 0.660
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.660