PV11_01295 (Exophiala sideris)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 PV11_01295 T318773_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RFX1
M00066_2.00
Saccharomyces cerevisiae
NSGTTGCYAN

NTRGCAACSN
PBM
Badis et al.(2008)
RFX1_4537
0.680 0.481
RFX1
M07494_2.00
Saccharomyces cerevisiae
BGTTRCYA

TRGYAACV
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1
0.680 0.481
RFX1
M08600_2.00
Saccharomyces cerevisiae
CGTYRBYAYRGYWACM

KGTWRCYRTRVYRACG
Misc
DeBoer et al.(2011)
YLR176C_1478
0.680 0.481
RFX1
M08601_2.00
Saccharomyces cerevisiae
BGTTRCYA

TRGYAACV
Misc
DeBoer et al.(2011)
YLR176C_496
0.680 0.481
RFX1
M11251_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$RFX1_02
0.680 0.481
daf-19
M00709_2.00
Caenorhabditis elegans
SGTTRCTADG

CHTAGYAACS
PBM
Narasimhan et al.(2015)
pTH10021
0.654 0.416
RFX2
M02449_2.00
Homo sapiens
BGTHRYYADG

CHTRRYDACV
PBM
Weirauch et al.(2014)
pTH9194
0.653 0.377
RFX2
M02450_2.00
Ornithorhynchus anatinus
NGTHRYYANV

BNTRRYDACN
PBM
Weirauch et al.(2014)
pTH9269
0.653 0.377
XP_002157607.1
M02456_2.00
Hydra magnipapillata
GTHDYYDNVN

NBNHRRHDAC
PBM
Weirauch et al.(2014)
pTH9199
0.653 0.377
GB41876
M02453_2.00
Apis mellifera
GTHDCYANVN

NBNTRGHDAC
PBM
Weirauch et al.(2014)
pTH9226
0.652 0.377
G4VLF2_SCHMA
M02452_2.00
Schistosoma mansoni
GTTGCTAD

HTAGCAAC
PBM
Weirauch et al.(2014)
pTH8587
0.651 0.377
Sjc_0102030
M02455_2.00
Schistosoma japonicum
GTTRCYANG

CNTRGYAAC
PBM
Weirauch et al.(2014)
pTH9285
0.651 0.377
Rfx3
M00188_2.00
Mus musculus
SNTRRHDACN

NGTHDYYANS
PBM
Badis et al.(2009)
Rfx3_3961
0.651 0.377
Rfx3
M03463_2.00
Mus musculus
SGTTRCCATGGYAACS

SGTTRCCATGGYAACS
SELEX
Jolma et al.(2013)
Rfx3_1
0.651 0.377
Rfx3
M09368_2.00
Mus musculus
BBGTTGCCATGGNRAC

GTYNCCATGGCAACVV
Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C
0.651 0.377
RFX2
M03454_2.00
Homo sapiens
BGTTRCCATGGYAACV

BGTTRCCATGGYAACV
SELEX
Jolma et al.(2013)
RFX2_1
0.651 0.377
RFX2
M03455_2.00
Homo sapiens
SGTTGCTARGCAACS

SGTTGCYTAGCAACS
SELEX
Jolma et al.(2013)
RFX2_2
0.651 0.377
Rfx2
M03461_2.00
Mus musculus
BGTTRCCATGGYAACV

BGTTRCCATGGYAACV
SELEX
Jolma et al.(2013)
Rfx2_1
0.651 0.377
Rfx2
M03462_2.00
Mus musculus
SGTTGCTARGCAACV

BGTTGCYTAGCAACS
SELEX
Jolma et al.(2013)
Rfx2_2
0.651 0.377
RFX2
M05719_2.00
Homo sapiens
NGTWDYYATRRHWACN

NGTWDYYATRRHWACN
SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX
0.651 0.377
Rfx2
M05888_2.00
Mus musculus
NGTTRCYATGGHDAY

RTHDCCATRGYAACN
SMiLE-seq
Isakova et al.(2017)
RFX2
0.651 0.377
RFX2
M09362_2.00
Homo sapiens
YNGTTGCCATGGVRACVV

BBGTYBCCATGGCAACNR
Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A
0.651 0.377
Rfx2
M09366_2.00
Mus musculus
NBYBGTYNCCMTGGCAACNSSS

SSSNGTTGCCAKGGNRACVRVN
Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A
0.651 0.377
RFX2
M09628_2.00
Homo sapiens
BGTTKCCATGGMAAC

GTTKCCATGGMAACV
Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402
0.651 0.377
RFX2
M05720_2.00
Homo sapiens
BGTTRCCATGRYAACV

BGTTRYCATGGYAACV
SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX
0.651 0.377
RFX1
M02447_2.00
Anolis carolinensis
GTHRCYANGN

NCNTRGYDAC
PBM
Weirauch et al.(2014)
pTH9223
0.651 0.377
RFX1
M02451_2.00
Tetraodon nigroviridis
GTHDYYANGN

NCNTRRHDAC
PBM
Weirauch et al.(2014)
pTH9385
0.651 0.377
RFX1
M05723_2.00
Homo sapiens
BGTTRYCATGRYAACV

BGTTRYCATGRYAACV
SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX
0.651 0.377
Rfx1
M08162_2.00
Mus musculus
GTTGCYADGGNRAC

GTYNCCHTRGCAAC
ChIP-seq
Mathelier et al.(2014)
MA0509.1
0.651 0.377
RFX1
M09363_2.00
Homo sapiens
BBBSSNGTTGCCADGGNRMCVV

BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B
0.651 0.377
Rfx1
M09367_2.00
Mus musculus
BBBSSNGTTGCCADGGNRMCVV

BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A
0.651 0.377
RFX1
M11245_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EFC_Q6
0.651 0.377
RFX1
M11246_2.00
Homo sapiens
HNGTTRCYWVGYDMYNN

NNRKHRCBWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_01
0.651 0.377
RFX1
M11247_2.00
Homo sapiens
HNGTTRCYWBVGYDMYNN

NNRKHRCBVWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_02
0.651 0.377
RFX1
M11248_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX1_Q6
0.651 0.377
RFX1
M05724_2.00
Homo sapiens
BGTWRYCATGRYWACV

BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX
0.651 0.377
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KIV85621 RFX 221 297
KIV85622 RFX 221 297

Links

Other RFX family TFs
Other Exophiala sideris TFs

411 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
27940.m000323 Ricinus communis 27940.m000323 I 0.000
AMTR_s00008p00092930 Amborella trichopoda AMTR_s00008p00092930 I 0.000
Aquca_053_00062 Aquilegia coerulea Aquca_053_00062 I 0.000
Aquca_082_00024 Aquilegia coerulea Aquca_082_00024 I 0.000
Bo1g017650 Brassica oleracea Bo1g017650 I 0.000
Bo2g132210 Brassica oleracea Bo2g132210 I 0.000
Bo7g077300 Brassica oleracea Bo7g077300 I 0.000
Bo8g049560 Brassica oleracea Bo8g049560 I 0.000
Bo9g069320 Brassica oleracea Bo9g069320 I 0.000
Bostr.28243s0001 Boechera stricta Bostr.28243s0001 I 0.000
Bostr.30275s0218 Boechera stricta Bostr.30275s0218 I 0.000
Bra017500 Brassica rapa Bra017500 I 0.000
Bra017501 Brassica rapa Bra017501 I 0.000
Bra021041 Brassica rapa Bra021041 I 0.000
Bra022107 Brassica rapa Bra022107 I 0.000
Bra024961 Brassica rapa Bra024961 I 0.000
Bra040167 Brassica rapa Bra040167 I 0.000
BRADI5G17370 Brachypodium distachyon BRADI5G17370 I 0.000
Cagra.3356s0048 Capsella grandiflora Cagra.3356s0048 I 0.000
Cagra.3675s0017 Capsella grandiflora Cagra.3675s0017 I 0.000
Carubv10007115m.g Capsella rubella Carubv10007115m.g I 0.000
Carubv10026597m.g Capsella rubella Carubv10026597m.g I 0.000
cassava42719.valid.m1 Manihot esculenta cassava42719.valid.m1 I 0.000
Ca_02313 Cicer arietinum Ca_02313 I 0.000
Ciclev10019614m.g Citrus clementina Ciclev10019614m.g I 0.000
estExt_fgenesh1_pg.C_1220019 Physcomitrella patens estExt_fgenesh1_pg.C_1220019 I 0.000
estExt_fgenesh1_pg.C_4100005 Physcomitrella patens estExt_fgenesh1_pg.C_4100005 I 0.000
Eucgr.D02129 Eucalyptus grandis Eucgr.D02129 I 0.000
Eucgr.E00364 Eucalyptus grandis Eucgr.E00364 I 0.000
evm.TU.supercontig_74.95 Carica papaya evm.TU.supercontig_74.95 I 0.000
F775_19309 Aegilops tauschii F775_19309 I 0.000
GATA26 Arabidopsis lyrata fgenesh2_kg.7__2553__AT4G17570.1 I 0.000
GATA26 Arabidopsis thaliana AT4G17570 D 0.000
GATA27 Arabidopsis thaliana AT5G47140 D 0.000
GATA27 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8000066 I 0.000
GLYMA01G41370 Glycine max GLYMA01G41370 I 0.000
GLYMA05G05320 Glycine max GLYMA05G05320 I 0.000
GLYMA08G19681 Glycine max GLYMA08G19681 N 0.000
GLYMA11G04060 Glycine max GLYMA11G04060 I 0.000
GLYMA17G15610 Glycine max GLYMA17G15610 I 0.000
Gorai.003G177500 Gossypium raimondii Gorai.003G177500 I 0.000
Gorai.004G193200 Gossypium raimondii Gorai.004G193200 I 0.000
Gorai.006G214400 Gossypium raimondii Gorai.006G214400 I 0.000
Gorai.008G231500 Gossypium raimondii Gorai.008G231500 I 0.000
GSMUA_Achr11G17690_001 Musa acuminata GSMUA_Achr11G17690_001 I 0.000
GSMUA_Achr11G23110_001 Musa acuminata GSMUA_Achr11G23110_001 I 0.000
GSMUA_Achr2G18310_001 Musa acuminata GSMUA_Achr2G18310_001 I 0.000
GSMUA_Achr5G18290_001 Musa acuminata GSMUA_Achr5G18290_001 I 0.000
GSMUA_Achr8G15000_001 Musa acuminata GSMUA_Achr8G15000_001 I 0.000
LjSGA_060304.1 Lotus japonicus LjSGA_060304.1 I 0.000
Lus10000587.g Linum usitatissimum Lus10000587.g I 0.000
Lus10011008.g Linum usitatissimum Lus10011008.g I 0.000
Lus10011010.g Linum usitatissimum Lus10011010.g I 0.000
mgf015364m Mimulus guttatus mgf015364m I 0.000
mgf016271m Mimulus guttatus mgf016271m I 0.000
mgf024972m Mimulus guttatus mgf024972m I 0.000
MLOC_15510 Hordeum vulgare MLOC_15510 I 0.000
orange1.1g009155m.g Citrus sinensis orange1.1g009155m.g I 0.000
PGSC0003DMG400044001 Solanum tuberosum PGSC0003DMG400044001 N 0.000
PK11095.1 Cannabis sativa PK11095.1 I 0.000
POPTR_0001s15170 Populus trichocarpa POPTR_0001s15170 I 0.000
POPTR_0003s08080 Populus trichocarpa POPTR_0003s08080 I 0.000
SapurV1A.0107s0250 Salix purpurea SapurV1A.0107s0250 I 0.000
SapurV1A.0201s0160 Salix purpurea SapurV1A.0201s0160 I 0.000
TCM_015870 Theobroma cacao TCM_015870 I 0.000
Thhalv10000871m.g Eutrema salsugineum Thhalv10000871m.g I 0.000
Thhalv10024940m.g Eutrema salsugineum Thhalv10024940m.g I 0.000
Traes_2AL_01E6C08C0 Triticum aestivum Traes_2AL_01E6C08C0 I 0.000
Traes_2BL_4575D095D Triticum aestivum Traes_2BL_4575D095D I 0.000
Traes_2DL_C46B73FA3 Triticum aestivum Traes_2DL_C46B73FA3 I 0.000