tetur02g00620 (Tetranychus urticae)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 tetur02g00620 T318823_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Rfx7
M00823_2.00
Mus musculus
GTYRCYRNSB

VSNYRGYRAC
PBM
Weirauch et al.(2013)
pTH3516
0.689 0.570
Rfx7
M00187_2.00
Mus musculus
BGTHDYYRNN

NNYRRHDACV
PBM
Badis et al.(2009)
Rfxdc2_3516
0.689 0.570
RFX7
M05729_2.00
Homo sapiens
BGTTRCYRY

RYRGYAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX
0.689 0.570
RFX7
M05730_2.00
Homo sapiens
BGTTGCYRB

VYRGCAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX
0.689 0.570
RFX5
M03458_2.00
Homo sapiens
BGTTRCYATRGYAACV

BGTTRCYATRGYAACV
SELEX
Jolma et al.(2013)
RFX5_1
0.681 0.506
RFX5
M03459_2.00
Homo sapiens
BGTTGCYATGGYAACV

BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_2
0.681 0.506
RFX5
M03460_2.00
Homo sapiens
BGTTGCYATGGYAACV

BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_3
0.681 0.506
RFX5
M05725_2.00
Homo sapiens
BGTTRCYANGBGTTGCYRN

NYRGCAACVCNTRGYAACV
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1
0.681 0.506
RFX5
M05726_2.00
Homo sapiens
NYRVYAACSGTTRCYAN

NTRGYAACSGTTRBYRN
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2
0.681 0.506
RFX5
M08009_2.00
Homo sapiens
KCRBYDGTTRCYRRG

CYYRGYAACHRVYGM
ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford
0.681 0.506
RFX5
M08010_2.00
Homo sapiens
DBVBYDGTTGCYRGGBVRR

YYBVCCYRGCAACHRVBVH
ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford
0.681 0.506
RFX5
M08011_2.00
Homo sapiens
TCVBYDGTTDCYRDG

CHYRGHAACHRVBGA
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford
0.681 0.506
RFX5
M08012_2.00
Homo sapiens
YDGTTRCYRKGBVRV

BYBVCMYRGYAACHR
ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford
0.681 0.506
RFX5
M09364_2.00
Homo sapiens
VNNVBYDGTTGCYRKGNVRV

BYBNCMYRGCAACHRVBNNB
Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A
0.681 0.506
RFX5
M09629_2.00
Homo sapiens
NDGTTRCYADGV

BCHTRGYAACHN
Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477
0.681 0.506
RFX5
M11249_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_03
0.681 0.506
RFX5
M11250_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_05
0.681 0.506
RFX5
M05727_2.00
Homo sapiens
BGTYRYYRNGBGTTGYYRN

NYRRCAACVCNYRRYRACV
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1
0.681 0.506
RFX5
M05728_2.00
Homo sapiens
NTRGYAASSGTYRBYRN

NYRVYRACSSTTRCYAN
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2
0.681 0.506
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
tetur02g00620.1 RFX 67 145

Links

Other RFX family TFs
Other Tetranychus urticae TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ISCW001129 Ixodes scapularis ISCW001129 I 0.736
NV23037 Nasonia vitripennis NV23037 I 0.729
GB49419 Apis mellifera GB49419 I 0.726
SINV24627 Solenopsis invicta SINV24627 I 0.726
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.726
ACEP24602 Atta cephalotes ACEP24602 I 0.726
L798_03377 Zootermopsis nevadensis L798_03377 I 0.723
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.717
A_01977 Schistosoma haematobium A_01977 I 0.715
Smp_040350 Schistosoma mansoni Smp_040350 I 0.715
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.715
TsM_000553100 Taenia solium TsM_000553100 I 0.715
MCINX003210 Melitaea cinxia MCINX003210 I 0.714
CLEC011984 Cimex lectularius CLEC011984 I 0.714
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.714
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.714
HMEL011744 Heliconius melpomene HMEL011744 I 0.714
PHUM035280 Pediculus humanus PHUM035280 I 0.713
TC008959 Tribolium castaneum TC008959 I 0.712
KGM_16732 Danaus plexippus KGM_16732 I 0.710
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.710
LotgiG138119 Lottia gigantea LotgiG138119 I 0.709
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.708
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.708
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.708
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.707
GE24099 Drosophila yakuba FBgn0241238 I 0.707
GG10435 Drosophila erecta FBgn0102744 I 0.707
CG9727 Drosophila melanogaster FBgn0037445 I 0.707
GI24583 Drosophila mojavensis FBgn0147305 I 0.707
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.707
GK13786 Drosophila willistoni FBgn0215794 I 0.707
GF16654 Drosophila ananassae FBgn0093675 I 0.707
GM10553 Drosophila sechellia FBgn0165499 I 0.707
GD19544 Drosophila simulans FBgn0191039 I 0.707
GJ22650 Drosophila virilis FBgn0209754 I 0.707
GL22063 Drosophila persimilis FBgn0159655 I 0.707
T265_11740 Opisthorchis viverrini T265_11740 I 0.706
csin102559 Clonorchis sinensis csin102559 I 0.706
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.705
GH18082 Drosophila grimshawi FBgn0125550 I 0.705
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.705
AFAF011654 Anopheles farauti AFAF011654 I 0.703
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.702
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.702
AAEL013752 Aedes aegypti AAEL013752 I 0.702
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.702
AATE016751 Anopheles atroparvus AATE016751 I 0.701
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.701
ACHR008891 Anopheles christyi ACHR008891 I 0.701
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.701
AARA004226 Anopheles arabiensis AARA004226 I 0.701
ACOM036649 Anopheles coluzzii ACOM036649 I 0.701
AGAP013226 Anopheles gambiae AGAP013226 I 0.701
AALB008384 Anopheles albimanus AALB008384 I 0.701
ASIS020285 Anopheles sinensis ASIS020285 I 0.701
AEPI006624 Anopheles epiroticus AEPI006624 I 0.701
AMEM009524 Anopheles merus AMEM009524 I 0.701
AFUN011072 Anopheles funestus AFUN011072 I 0.701
ADAC008404 Anopheles darlingi ADAC008404 I 0.701
AMEC002251 Anopheles melas AMEC002251 I 0.701
AMIN003942 Anopheles minimus AMIN003942 I 0.701
ADIR010232 Anopheles dirus ADIR010232 I 0.701
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.701
ACUA017169 Anopheles culicifacies ACUA017169 I 0.701
LCUP014592 Lucilia cuprina LCUP014592 I 0.699
MDOA009335 Musca domestica MDOA009335 I 0.699
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.699
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.699
rfx7 Danio rerio ENSDARG00000077237 I 0.698
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.696
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.695
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.695
rfx7 Oryzias latipes ENSORLG00000008583 I 0.694
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.694
RFX7 Oryzias latipes ENSORLG00000005342 I 0.694
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.694
RFX7 Danio rerio ENSDARG00000103691 I 0.694
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.694
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.694
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.694
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.694
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.694
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.693
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.693
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.692
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.691
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.691
RFX7 Felis catus ENSFCAG00000029408 I 0.691
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.691
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.690
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.690
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.689
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.689
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.689
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.689
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.689
Rfx7 Mus musculus ENSMUSG00000037674 D 0.689
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.689
RFX7 Homo sapiens ENSG00000181827 D 0.689
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.689
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.689
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.689
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.689
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.689
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.689
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.689
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.689
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.689
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.689
RFX7 Bos taurus ENSBTAG00000000565 I 0.689
RFX7 Canis familiaris ENSCAFG00000016029 I 0.689
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.689
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.689
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.689
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.689
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.689
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.689
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.689
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.689
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.689
RFX7 Procavia capensis ENSPCAG00000004974 I 0.689
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.689
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.688
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.688
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.685
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.685
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.685
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.684
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.683
Aan_R011989 Calypte anna Aan_R011989 I 0.683
CapteG131555 Capitella teleta CapteG131555 I 0.683
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.683
RFX7 Sorex araneus ENSSARG00000010801 I 0.683
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.683
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.683
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.683
RFX7 Equus caballus ENSECAG00000002379 I 0.683
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.682
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.682
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.682
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.682
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.681
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.681
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.681
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.681
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.681
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.681
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.681
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.681
RFX5 Homo sapiens ENSG00000143390 D 0.681
RFX5 Felis catus ENSFCAG00000005568 I 0.681
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.681
RFX5 Canis familiaris ENSCAFG00000012661 I 0.681
RFX5 Bos taurus ENSBTAG00000017580 I 0.681
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.681
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.681
RFX5 Echinops telfairi ENSETEG00000013503 I 0.681
RFX5 Equus caballus ENSECAG00000024774 I 0.681
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.681
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.681
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.681
RFX5 Sus scrofa ENSSSCG00000006625 I 0.681
RFX5 Sorex araneus ENSSARG00000000750 I 0.681
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.681
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.681
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.681
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.681
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.681
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.681
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.680
Rfx5 Mus musculus ENSMUSG00000005774 I 0.680
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.680
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.678
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.678
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.677
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.677
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.677
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.677
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.676
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.676
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.676
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.676
RFX7 Echinops telfairi ENSETEG00000015037 I 0.674
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.674
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.674
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.672
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.672
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.672
rfx5 Danio rerio ENSDARG00000063258 I 0.671
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.671
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.671
RFX5 Gallus gallus ENSGALG00000000836 I 0.670
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.670
RFX5 Procavia capensis ENSPCAG00000011056 I 0.669
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.669
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.668
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.667
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.667
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.666
D915_00887 Fasciola hepatica D915_00887 I 0.666
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.665
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.665
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.665
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.665
Aan_R010941 Calypte anna Aan_R010941 I 0.661
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.661
AQUA006869 Anopheles quadriannulatus AQUA006869 N 0.659
MESCA005939 Megaselia scalaris MESCA005939 N 0.657
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.656
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.656
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.655
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.654
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.652
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.652