CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Myotis_brandtii_RFX6_10035596
(
Myotis brandtii
)
RFX
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02257 (RFX_DNA_binding)
IPR003150
Myotis_brandtii_RFX6_10035596
T319005_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Rfx6
M09365_2.00
Mus musculus
BDGTWKCYNDG
CHNRGMAACHV
Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C
0.722
0.940
RFX4
M02448_2.00
Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC
PBM
Weirauch et al.(2014)
pTH9249
0.667
0.620
Rfx4
M00186_2.00
Mus musculus
GTHDYYNNSN
NSNNRRHDAC
PBM
Badis et al.(2009)
Rfx4_3761
0.667
0.620
RFX4
M03456_2.00
Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN
SELEX
Jolma et al.(2013)
RFX4_1
0.667
0.620
RFX4
M03457_2.00
Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN
SELEX
Jolma et al.(2013)
RFX4_2
0.667
0.620
RFX4
M05721_2.00
Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX
0.667
0.620
RFX4
M05722_2.00
Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX
0.667
0.620
For this family, TFs with SR scores >
0.650
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Myotis_brandtii_RFX6_10035596
RFX
46
95
TQLTLQWLEENYIVCEGVCLPRCILYAHYLDFCRKEKLEPACAATFGKGG
Links
Other
RFX
family TFs
Other
Myotis brandtii
TFs
166 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy