e_gw1.6.922.1 (Nectria haematococca)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 e_gw1.6.922.1 T319027_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RFX1
M00066_2.00
Saccharomyces cerevisiae
NSGTTGCYAN

NTRGCAACSN
PBM
Badis et al.(2008)
RFX1_4537
0.671 0.500
RFX1
M07494_2.00
Saccharomyces cerevisiae
BGTTRCYA

TRGYAACV
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1
0.671 0.500
RFX1
M08600_2.00
Saccharomyces cerevisiae
CGTYRBYAYRGYWACM

KGTWRCYRTRVYRACG
Misc
DeBoer et al.(2011)
YLR176C_1478
0.671 0.500
RFX1
M08601_2.00
Saccharomyces cerevisiae
BGTTRCYA

TRGYAACV
Misc
DeBoer et al.(2011)
YLR176C_496
0.671 0.500
RFX1
M11251_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$RFX1_02
0.671 0.500
daf-19
M00709_2.00
Caenorhabditis elegans
SGTTRCTADG

CHTAGYAACS
PBM
Narasimhan et al.(2015)
pTH10021
0.656 0.462
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.6.922.1 RFX 155 232

Links

Other RFX family TFs
Other Nectria haematococca TFs

Invalid Input OrderBy

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action