fgenesh1_pg.C_scaffold_2000774 (Phanerochaete chrysosporium)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 fgenesh1_pg.C_scaffold_2000774 T319037_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.651 0.430
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.651 0.430
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.651 0.430
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.651 0.430
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.651 0.430
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_2000774 RFX 219 297

Links

Other RFX family TFs
Other Phanerochaete chrysosporium TFs

103 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
K443DRAFT_673983 Laccaria amethystina K443DRAFT_673983 I 0.788
LACBIDRAFT_311799 Laccaria bicolor LACBIDRAFT_311799 I 0.788
HETIRDRAFT_170415 Heterobasidion irregulare HETIRDRAFT_170415 I 0.788
GALMADRAFT_236082 Galerina marginata GALMADRAFT_236082 I 0.788
EuGene4000430 Heterobasidion annosum EuGene4000430 I 0.788
FOMPIDRAFT_1038544 Fomitopsis pinicola FOMPIDRAFT_1038544 I 0.788
M378DRAFT_67300 Amanita muscaria M378DRAFT_67300 I 0.788
M413DRAFT_306124 Hebeloma cylindrosporum M413DRAFT_306124 I 0.788
PHACADRAFT_25186 Phanerochaete carnosa PHACADRAFT_25186 I 0.788
PHLGIDRAFT_115381 Phlebiopsis gigantea PHLGIDRAFT_115381 I 0.788
SCHCODRAFT_71685 Schizophyllum commune SCHCODRAFT_71685 I 0.788
CY34DRAFT_103779 Suillus luteus CY34DRAFT_103779 I 0.788
SERLA73DRAFT_85891 Serpula lacrymans SERLA73DRAFT_85891 I 0.788
AGABI2DRAFT_184602 Agaricus bisporus AGABI2DRAFT_184602 I 0.788
PILCRDRAFT_94503 Piloderma croceum PILCRDRAFT_94503 I 0.788
JAAARDRAFT_166855 Jaapia argillacea JAAARDRAFT_166855 I 0.787
GLOTRDRAFT_32962 Gloeophyllum trabeum GLOTRDRAFT_32962 I 0.787
M404DRAFT_124798 Pisolithus tinctorius M404DRAFT_124798 I 0.786
SCLCIDRAFT_138144 Scleroderma citrinum SCLCIDRAFT_138144 I 0.786
PISMIDRAFT_670796 Pisolithus microcarpus PISMIDRAFT_670796 I 0.786
DICSQDRAFT_106385 Dichomitus squalens DICSQDRAFT_106385 I 0.785
BN946_scf184858.g55 Trametes cinnabarina BN946_scf184858.g55 I 0.785
PLEOSDRAFT_1038101 Pleurotus ostreatus PLEOSDRAFT_1038101 I 0.784
PAXRUDRAFT_31952 Paxillus rubicundulus PAXRUDRAFT_31952 I 0.783
CERSUDRAFT_149026 Ceriporiopsis subvermispora CERSUDRAFT_149026 I 0.783
Moror_7356 Moniliophthora roreri Moror_7356 N 0.783
FIBRA_04592 Fibroporia radiculosa FIBRA_04592 I 0.781
M407DRAFT_70388 Tulasnella calospora M407DRAFT_70388 I 0.780
BOTBODRAFT_100719 Botryobasidium botryosum BOTBODRAFT_100719 N 0.780
CC1G_00311 Coprinopsis cinerea CC1G_00311 I 0.780
V565_046180 Rhizoctonia solani V565_046180 N 0.774
PIIN_08876 Piriformospora indica PIIN_08876 N 0.768
M408DRAFT_113587 Serendipita vermifera M408DRAFT_113587 N 0.763
DACRYDRAFT_45233 Dacryopinax sp DACRYDRAFT_45233 I 0.757
PGTG_11391 Puccinia graminis PGTG_11391 I 0.728
PTTG_01668 Puccinia triticina PTTG_01668 I 0.710
E5Q_03025 Mixia osmundae E5Q_03025 I 0.695
E5Q_03026 Mixia osmundae E5Q_03026 I 0.695
fgeneshTM_pg.2_#_559 Tremella mesenterica fgeneshTM_pg.2_#_559 I 0.694
MVLG_04348 Microbotryum violaceum MVLG_04348 I 0.682
SPPG_01648 Spizellomyces punctatus SPPG_01648 I 0.674
A1Q1_00828 Trichosporon asahii A1Q1_00828 I 0.671
GPLIN_000191300 Globodera pallida GPLIN_000191300 I 0.665
NERG_01713 Nematocida sp NERG_01713 I 0.664
O9G_004738 Rozella allomycis O9G_004738 I 0.664
PNEG_02893 Pneumocystis murina PNEG_02893 I 0.662
PredSwiss_ASS2010_3110.1 Pneumocystis carinii PredSwiss_ASS2010_3110.1 I 0.662
PredSwiss_CON653.4 Pneumocystis carinii PredSwiss_CON653.4 I 0.662
NEPG_00460 Nematocida parisii ertm1 NEPG_00460 I 0.661
GSTUM_00005211001 Tuber melanosporum GSTUM_00005211001 I 0.661
estExt_fgenesh1_pg.C_chr_80140 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_80140 I 0.657
CAGL0H03751g Candida glabrata CAGL0H03751g I 0.657
Mycgr3G110369 Zymoseptoria tritici Mycgr3G110369 I 0.657
SJAG_04839 Schizosaccharomyces japonicus SJAG_04839 I 0.657
sak1 Schizosaccharomyces pombe SPAC3G9.14 I 0.657
SMUV_0001085601 Syphacia muris SMUV_0001085601 I 0.656
ZYRO0E04642g Zygosaccharomyces rouxii ZYRO0E04642g I 0.655
EVEC_0001085201 Enterobius vermicularis EVEC_0001085201 I 0.655
AACERI_AaceriAAL010W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAAL010W I 0.654
BDDG_02784 Blastomyces dermatitidis BDDG_02784 I 0.654
SAKL0D08734g Lachancea kluyveri SAKL0D08734g I 0.654
ACRE_029400 Acremonium chrysogenum ACRE_029400 I 0.654
AGOS_AAL010W Ashbya gossypii AGOS_AAL010W I 0.654
14959_Multiple Saccharomyces mikatae 14959_Multiple I 0.654
YALI0_E13596g Yarrowia lipolytica YALI0_E13596g I 0.654
TDEL_0B05980 Torulaspora delbrueckii TDEL_0B05980 I 0.653
gw1.15.255.1 Mycosphaerella fijiensis gw1.15.255.1 I 0.653
tetur19g03130 Tetranychus urticae tetur19g03130 I 0.653
MYCFIDRAFT_10959 Pseudocercospora fijiensis MYCFIDRAFT_10959 I 0.653
DOTSEDRAFT_132769 Dothistroma septosporum DOTSEDRAFT_132769 I 0.653
HelroG82191 Helobdella robusta HelroG82191 I 0.653
HCBG_05483 Histoplasma capsulatum HCBG_05483 I 0.652
ZBAI_08430 Zygosaccharomyces bailii ZBAI_08430 I 0.652
CAGL0B04895g Candida glabrata CAGL0B04895g I 0.652
BAUCODRAFT_23427 Baudoinia compniacensis BAUCODRAFT_23427 I 0.652
XP_002492053.1 Pichia pastoris XP_002492053.1 I 0.652
ZBAI_03427 Zygosaccharomyces bailii ZBAI_03427 I 0.652
PVAR5_6603 Byssochlamys spectabilis PVAR5_6603 I 0.652
PAS_chr2-2_0153 Komagataella pastoris PAS_chr2-2_0153 I 0.652
fgenesh1_pg.00162_#_176 Aspergillus carbonarius fgenesh1_pg.00162_#_176 I 0.651
ANIA_02296 Aspergillus nidulans CADANIAG00008989 I 0.651
16177_Multiple Saccharomyces paradoxus 16177_Multiple I 0.651
CADAORAG00004061 Aspergillus oryzae CADAORAG00004061 I 0.651
CADANGAG00013568 Aspergillus niger CADANGAG00013568 I 0.651
PMAA_084960 Penicillium marneffei PMAA_084960 I 0.651
ACLA_009440 Aspergillus clavatus CADACLAG00001004 I 0.651
CADAFLAG00010851 Aspergillus flavus CADAFLAG00010851 I 0.651
LALA0_S03e09428g Lachancea lanzarotensis LALA0_S03e09428g I 0.651
AFUA_5G06120 Aspergillus fumigatus CADAFUAG00006202 I 0.651
ATEG_09416 Aspergillus terreus CADATEAG00008983 I 0.651
NFIA_036980 Neosartorya fischeri CADNFIAG00003299 I 0.651
GNLVRS01_PISO0E08012g Millerozyma farinosa GNLVRS01_PISO0E08012g I 0.651
GNLVRS01_PISO0F09355g Millerozyma farinosa GNLVRS01_PISO0F09355g I 0.651
TSTA_119980 Talaromyces stipitatus TSTA_119980 I 0.651
PAAG_00480 Paracoccidioides sp lutzii PAAG_00480 I 0.651
RFX1 Saccharomyces cerevisiae YLR176C D 0.651
PMAA_084960 Talaromyces marneffei PMAA_084960 I 0.651
SOCG_01623 Schizosaccharomyces octosporus SOCG_01623 I 0.651
PABG_06744 Paracoccidioides brasiliensis PABG_06744 I 0.651
EURHEDRAFT_516724 Aspergillus ruber EURHEDRAFT_516724 I 0.651
PTSG_10225 Salpingoeca rosetta PTSG_10225 I 0.651
SEPMUDRAFT_46603 Sphaerulina musiva SEPMUDRAFT_46603 I 0.651
PDE_02161 Penicillium oxalicum PDE_02161 I 0.650