gw.501.1.1 (Branchiostoma floridae)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 gw.501.1.1 T319046_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Rfx6
M09365_2.00
Mus musculus
BDGTWKCYNDG

CHNRGMAACHV
Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C
0.655 0.938
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw.501.1.1 RFX 1 32

Links

Other RFX family TFs
Other Branchiostoma floridae TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R009636 Calypte anna Aan_R009636 I 0.655
Afo_R005589 Aptenodytes forsteri Afo_R005589 I 0.655
Brh_R008084 Buceros rhinoceros Brh_R008084 I 0.655
CapteG220726 Capitella teleta CapteG220726 I 0.653
CGI_10009133 Crassostrea gigas CGI_10009133 I 0.658
ENSAMEG00000005843 Ailuropoda melanoleuca ENSAMEG00000005843 I 0.655
ENSAMXG00000017899 Astyanax mexicanus ENSAMXG00000017899 I 0.655
ENSAPLG00000002929 Anas platyrhynchos ENSAPLG00000002929 I 0.655
ENSBTAP00000000329-D1 Bos grunniens ENSBTAP00000000329-D1 I 0.655
ENSCSAG00000015856 Chlorocebus sabaeus ENSCSAG00000015856 I 0.655
ENSFALG00000011057 Ficedula albicollis ENSFALG00000011057 I 0.655
ENSGMOG00000018155 Gadus morhua ENSGMOG00000018155 I 0.655
ENSLACG00000004044 Latimeria chalumnae ENSLACG00000004044 I 0.655
ENSLOCG00000017133 Lepisosteus oculatus ENSLOCG00000017133 I 0.655
ENSMICG00000009092 Microcebus murinus ENSMICG00000009092 I 0.655
ENSMMUP00000022612 Macaca fascicularis ENSMMUP00000022612 I 0.655
ENSMPUG00000014252 Mustela putorius furo ENSMPUG00000014252 I 0.655
ENSNLEG00000013258 Nomascus leucogenys ENSNLEG00000013258 I 0.655
ENSOANG00000020392 Ornithorhynchus anatinus ENSOANG00000020392 I 0.653
ENSOARG00000008929 Ovis aries ENSOARG00000008929 I 0.655
ENSONIG00000015740 Oreochromis niloticus ENSONIG00000015740 I 0.655
ENSORLG00000018626 Oryzias latipes ENSORLG00000018626 I 0.655
ENSPANG00000008240 Papio anubis ENSPANG00000008240 I 0.655
ENSPFOG00000003162 Poecilia formosa ENSPFOG00000003162 I 0.655
ENSPPYG00000016960 Pongo abelii ENSPPYG00000016960 I 0.655
ENSPSIG00000008368 Pelodiscus sinensis ENSPSIG00000008368 I 0.655
ENSSHAG00000009393 Sarcophilus harrisii ENSSHAG00000009393 I 0.655
ENSSTOG00000012365 Ictidomys tridecemlineatus ENSSTOG00000012365 I 0.655
ENSTSYG00000008237 Tarsius syrichta ENSTSYG00000008237 I 0.655
ENSXMAG00000015726 Xiphophorus maculatus ENSXMAG00000015726 I 0.655
Gfo_R016155 Geospiza fortis Gfo_R016155 I 0.655
LotgiG122187 Lottia gigantea LotgiG122187 I 0.658
NEMVEDRAFT_v1g85569 Nematostella vectensis NEMVEDRAFT_v1g85569 I 0.657
Ocbimv22008419m.g Octopus bimaculoides Ocbimv22008419m.g I 0.658
Pvit_05271 Pogona vitticeps Pvit_05271 I 0.655
RFX6 Tupaia belangeri ENSTBEG00000011557 I 0.655
RFX6 Tursiops truncatus ENSTTRG00000011052 I 0.655
rfx6 Takifugu rubripes ENSTRUG00000008447 I 0.655
rfx6 Tetraodon nigroviridis ENSTNIG00000009728 I 0.655
RFX6 Callithrix jacchus ENSCJAG00000004349 I 0.655
RFX6 Vicugna pacos ENSVPAG00000002198 I 0.655
rfx6 Xenopus tropicalis XB-GENE-1013164 I 0.655
RFX6 Taeniopygia guttata ENSTGUG00000011924 I 0.655
RFX6 Sorex araneus ENSSARG00000012002 I 0.655
RFX6 Pteropus vampyrus ENSPVAG00000000614 I 0.655
RFX6 Homo sapiens ENSG00000185002 I 0.655
RFX6 Anolis carolinensis ENSACAG00000014185 I 0.655
RFX6 Bos taurus ENSBTAG00000000264 I 0.655
RFX6 Felis catus ENSFCAG00000018903 I 0.655
RFX6 Erinaceus europaeus ENSEEUG00000001945 I 0.655
Rfx6 Dipodomys ordii ENSDORG00000013591 I 0.655
RFX6 Dasypus novemcinctus ENSDNOG00000019162 I 0.655
rfx6 Danio rerio ENSDARG00000041702 I 0.655
RFX6 Cavia porcellus ENSCPOG00000015023 I 0.655
rfx6 Gasterosteus aculeatus ENSGACG00000005840 I 0.655
RFX6 Gallus gallus ENSGALG00000014918 I 0.655
RFX6 Pan troglodytes ENSPTRG00000018540 I 0.655
RFX6 Otolemur garnettii ENSOGAG00000011937 I 0.655
RFX6 Oryctolagus cuniculus ENSOCUG00000013227 I 0.655
Rfx6 Mus musculus ENSMUSG00000019900 D 0.655
RFX6 Monodelphis domestica ENSMODG00000017815 I 0.655
RFX6 Macaca mulatta ENSMMUG00000017189 I 0.655
RFX6 Myotis lucifugus ENSMLUG00000006665 I 0.655
RFX6 Meleagris gallopavo ENSMGAG00000013368 I 0.655
RFX6 Loxodonta africana ENSLAFG00000003465 I 0.655
RFX6 Canis familiaris ENSCAFG00000000915 I 0.655
rfx6.L Xenopus laevis XB-GENE-6488525 I 0.655
Sakowv30020492m.g Saccoglossus kowalevskii Sakowv30020492m.g I 0.660
SMAR001902 Strigamia maritima SMAR001902 I 0.656
SPU_025817 Strongylocentrotus purpuratus SPU_025817 I 0.657
Tal_R000797 Tyto alba Tal_R000797 I 0.655