Ocbimv22018561m.g (Octopus bimaculoides)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 Ocbimv22018561m.g T319050_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RFX4
M02448_2.00
Cavia porcellus
GTHDYYNNGN

NCNNRRHDAC
PBM
Weirauch et al.(2014)
pTH9249
0.656 0.267
Rfx4
M00186_2.00
Mus musculus
GTHDYYNNSN

NSNNRRHDAC
PBM
Badis et al.(2009)
Rfx4_3761
0.656 0.267
RFX4
M03456_2.00
Homo sapiens
NGTWRYCATRGHWACN

NGTWDCYATGRYWACN
SELEX
Jolma et al.(2013)
RFX4_1
0.656 0.267
RFX4
M03457_2.00
Homo sapiens
NGTTGCYRRGCAACS

SGTTGCYYRGCAACN
SELEX
Jolma et al.(2013)
RFX4_2
0.656 0.267
RFX4
M05721_2.00
Homo sapiens
BGTWRYCATGRYWACV

BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX
0.656 0.267
RFX4
M05722_2.00
Homo sapiens
BGTWRYCATGRYWACV

BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX
0.656 0.267
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22018560m.p RFX 105 165
Ocbimv22018561m.p RFX 105 165

Links

Other RFX family TFs
Other Octopus bimaculoides TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
HelroG184328 Helobdella robusta HelroG184328 I 0.665
fgenesh2_pg.scaffold_3000303 Monosiga brevicollis fgenesh2_pg.scaffold_3000303 I 0.662
TriadG51992 Trichoplax adhaerens TriadG51992 I 0.661
CGI_10018775 Crassostrea gigas CGI_10018775 I 0.661
LotgiG113173 Lottia gigantea LotgiG113173 I 0.659
ENSAMXG00000020148 Astyanax mexicanus ENSAMXG00000020148 I 0.658
ENSTSYG00000008562 Tarsius syrichta ENSTSYG00000008562 I 0.658
rfx4 Tetraodon nigroviridis ENSTNIG00000012137 I 0.658
rfx4 Takifugu rubripes ENSTRUG00000008925 I 0.658
ENSSSCG00000000168 Sus scrofa ENSSSCG00000000168 I 0.657
rfx4 Danio rerio ENSDARG00000026395 I 0.657
rfx4 Gasterosteus aculeatus ENSGACG00000011830 I 0.657
ENSXMAG00000001638 Xiphophorus maculatus ENSXMAG00000001638 I 0.657
Rfx4 Rattus norvegicus ENSRNOG00000051536 I 0.657
ENSPFOG00000016523 Poecilia formosa ENSPFOG00000016523 I 0.657
rfx4 Oryzias latipes ENSORLG00000011114 I 0.657
ENSONIG00000014750 Oreochromis niloticus ENSONIG00000014750 I 0.657
Alligator_sinensis_CCG009361.1 Alligator sinensis Alligator_sinensis_CCG009361.1 I 0.657
RFX4 Oryctolagus cuniculus ENSOCUG00000028228 I 0.656
RFX4 Otolemur garnettii ENSOGAG00000003546 I 0.656
RFX4 Pteropus vampyrus ENSPVAG00000005862 I 0.656
RFX4 Ochotona princeps ENSOPRG00000008616 I 0.656
ENSPANG00000006357 Papio anubis ENSPANG00000006357 I 0.656
ENSSHAG00000013027 Sarcophilus harrisii ENSSHAG00000013027 I 0.656
RFX4 Procavia capensis ENSPCAG00000005023 I 0.656
RFX4 Pan troglodytes ENSPTRG00000005391 I 0.656
ENSPSIG00000015178 Pelodiscus sinensis ENSPSIG00000015178 I 0.656
RFX4 Tursiops truncatus ENSTTRG00000010688 I 0.656
ENSP00000350552 Macaca fascicularis ENSP00000350552 I 0.656
ENSBTAP00000000169-D1 Bos grunniens ENSBTAP00000000169-D1 I 0.656
Gfo_R004629 Geospiza fortis Gfo_R004629 I 0.656
Myotis_brandtii_RFX4_10020417 Myotis brandtii Myotis_brandtii_RFX4_10020417 I 0.656
Sakowv30039514m.g Saccoglossus kowalevskii Sakowv30039514m.g I 0.656
Brh_R002885 Buceros rhinoceros Brh_R002885 I 0.656
Afo_R011060 Aptenodytes forsteri Afo_R011060 I 0.656
ENSTGUG00000011025 Taeniopygia guttata ENSTGUG00000011025 I 0.656
ENSOARG00000017616 Ovis aries ENSOARG00000017616 I 0.656
tetur18g01090 Tetranychus urticae tetur18g01090 I 0.656
Aan_R008662 Calypte anna Aan_R008662 I 0.656
RFX4 Tupaia belangeri ENSTBEG00000014680 I 0.656
ENSPPYG00000004906 Pongo abelii ENSPPYG00000004906 I 0.656
RFX4 Felis catus ENSFCAG00000015618 I 0.656
ENSFALG00000013407 Ficedula albicollis ENSFALG00000013407 I 0.656
RFX4 Homo sapiens ENSG00000111783 D 0.656
RFX4 Gallus gallus ENSGALG00000012647 I 0.656
RFX4 Gorilla gorilla ENSGGOG00000007759 I 0.656
RFX4 Equus caballus ENSECAG00000005111 I 0.656
ENSOANG00000005534 Ornithorhynchus anatinus ENSOANG00000005534 I 0.656
ENSAMEG00000016059 Ailuropoda melanoleuca ENSAMEG00000016059 I 0.656
RFX4 Anolis carolinensis ENSACAG00000015355 I 0.656
ENSAPLG00000005849 Anas platyrhynchos ENSAPLG00000005849 I 0.656
RFX4 Canis familiaris ENSCAFG00000001813 I 0.656
RFX4 Cavia porcellus ENSCPOG00000001750 D 0.656
ENSGMOG00000004267 Gadus morhua ENSGMOG00000004267 I 0.656
ENSCSAG00000002952 Chlorocebus sabaeus ENSCSAG00000002952 I 0.656
RFX4 Myotis lucifugus ENSMLUG00000016257 I 0.656
RFX4 Meleagris gallopavo ENSMGAG00000012867 I 0.656
ENSLACG00000017280 Latimeria chalumnae ENSLACG00000017280 I 0.656
ENSMPUG00000012144 Mustela putorius furo ENSMPUG00000012144 I 0.656
ENSNLEG00000006695 Nomascus leucogenys ENSNLEG00000006695 I 0.656
Rfx4 Mus musculus ENSMUSG00000020037 D 0.656
ENSLOCG00000015258 Lepisosteus oculatus ENSLOCG00000015258 I 0.656
RFX4 Macaca mulatta ENSMMUG00000022118 I 0.656
RFX4 Loxodonta africana ENSLAFG00000014122 I 0.656
SMU15029830 Schmidtea mediterranea SMU15029830 I 0.655
CGI_10006760 Crassostrea gigas CGI_10006760 I 0.655
CapteG108705 Capitella teleta CapteG108705 I 0.655
tetur35g00700 Tetranychus urticae tetur35g00700 I 0.654
NEMVEDRAFT_v1g96414 Nematostella vectensis NEMVEDRAFT_v1g96414 I 0.654
DI09_91p30 Microsporidia sp DI09_91p30 I 0.654
DAPPUDRAFT_42744 Daphnia pulex DAPPUDRAFT_42744 I 0.654
CapteG183181 Capitella teleta CapteG183181 I 0.654
DI09_1p30 Microsporidia sp DI09_1p30 I 0.654
estExt_fgenesh2_pg.C_4710022 Branchiostoma floridae estExt_fgenesh2_pg.C_4710022 I 0.653
ENSLACG00000022645 Latimeria chalumnae ENSLACG00000022645 I 0.653
SMAR012474 Strigamia maritima SMAR012474 I 0.653
Rfx4 Dipodomys ordii ENSDORG00000003959 I 0.653
NEMVEDRAFT_v1g122918 Nematostella vectensis NEMVEDRAFT_v1g122918 I 0.653
O9G_004738 Rozella allomycis O9G_004738 I 0.653
rfx1b Danio rerio ENSDARG00000075904 I 0.652
AALB009562 Anopheles albimanus AALB009562 I 0.652
ADAC010162 Anopheles darlingi ADAC010162 I 0.652
HCOI00376200 Haemonchus contortus HCOI00376200 I 0.652
rfx2 Takifugu rubripes ENSTRUG00000008788 I 0.652
scaffold324-EXSNAP2012.23 Pristionchus exspectatus scaffold324-EXSNAP2012.23 I 0.652
LDEC011807 Leptinotarsa decemlineata LDEC011807 I 0.652
ML02801a Mnemiopsis leidyi ML02801a I 0.652
Aqu1.223787 Amphimedon queenslandica Aqu1.223787 I 0.652
PHUM236330 Pediculus humanus PHUM236330 I 0.652
ISCW009030 Ixodes scapularis ISCW009030 I 0.652
ENSGACG00000018987 Gasterosteus aculeatus ENSGACG00000018987 I 0.651
HMEL015479 Heliconius melpomene HMEL015479 I 0.651
ENSTNIG00000014069 Tetraodon nigroviridis ENSTNIG00000014069 I 0.651
ANCCAN_07600 Ancylostoma caninum ANCCAN_07600 I 0.651
SMUV_0001085601 Syphacia muris SMUV_0001085601 I 0.651
Brh_R000260 Buceros rhinoceros Brh_R000260 I 0.651
ENSAMXG00000010111 Astyanax mexicanus ENSAMXG00000010111 I 0.650
ENSTRUG00000010058 Takifugu rubripes ENSTRUG00000010058 I 0.650
Rfx2 Mus musculus ENSMUSG00000024206 D 0.650
Rfx2 Rattus norvegicus ENSRNOG00000045846 I 0.650