CLEC013615 (Cimex lectularius)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 CLEC013615 T319061_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GB41876
M02453_2.00
Apis mellifera
GTHDCYANVN

NBNTRGHDAC
PBM
Weirauch et al.(2014)
pTH9226
0.773 0.911
XP_002157607.1
M02456_2.00
Hydra magnipapillata
GTHDYYDNVN

NBNHRRHDAC
PBM
Weirauch et al.(2014)
pTH9199
0.772 0.861
RFX1
M02447_2.00
Anolis carolinensis
GTHRCYANGN

NCNTRGYDAC
PBM
Weirauch et al.(2014)
pTH9223
0.771 0.861
RFX1
M02451_2.00
Tetraodon nigroviridis
GTHDYYANGN

NCNTRRHDAC
PBM
Weirauch et al.(2014)
pTH9385
0.771 0.861
RFX1
M05723_2.00
Homo sapiens
BGTTRYCATGRYAACV

BGTTRYCATGRYAACV
SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX
0.771 0.861
Rfx1
M08162_2.00
Mus musculus
GTTGCYADGGNRAC

GTYNCCHTRGCAAC
ChIP-seq
Mathelier et al.(2014)
MA0509.1
0.771 0.861
RFX1
M09363_2.00
Homo sapiens
BBBSSNGTTGCCADGGNRMCVV

BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B
0.771 0.861
Rfx1
M09367_2.00
Mus musculus
BBBSSNGTTGCCADGGNRMCVV

BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A
0.771 0.861
RFX1
M11245_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EFC_Q6
0.771 0.861
RFX1
M11246_2.00
Homo sapiens
HNGTTRCYWVGYDMYNN

NNRKHRCBWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_01
0.771 0.861
RFX1
M11247_2.00
Homo sapiens
HNGTTRCYWBVGYDMYNN

NNRKHRCBVWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_02
0.771 0.861
RFX1
M11248_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX1_Q6
0.771 0.861
RFX1
M05724_2.00
Homo sapiens
BGTWRYCATGRYWACV

BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX
0.771 0.861
Rfx3
M00188_2.00
Mus musculus
SNTRRHDACN

NGTHDYYANS
PBM
Badis et al.(2009)
Rfx3_3961
0.770 0.886
Rfx3
M03463_2.00
Mus musculus
SGTTRCCATGGYAACS

SGTTRCCATGGYAACS
SELEX
Jolma et al.(2013)
Rfx3_1
0.770 0.886
Rfx3
M09368_2.00
Mus musculus
BBGTTGCCATGGNRAC

GTYNCCATGGCAACVV
Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C
0.770 0.886
G4VLF2_SCHMA
M02452_2.00
Schistosoma mansoni
GTTGCTAD

HTAGCAAC
PBM
Weirauch et al.(2014)
pTH8587
0.767 0.823
RFX2
M02449_2.00
Homo sapiens
BGTHRYYADG

CHTRRYDACV
PBM
Weirauch et al.(2014)
pTH9194
0.767 0.873
RFX2
M02450_2.00
Ornithorhynchus anatinus
NGTHRYYANV

BNTRRYDACN
PBM
Weirauch et al.(2014)
pTH9269
0.767 0.873
Sjc_0102030
M02455_2.00
Schistosoma japonicum
GTTRCYANG

CNTRGYAAC
PBM
Weirauch et al.(2014)
pTH9285
0.765 0.810
RFX3
M03452_2.00
Homo sapiens
NGTTRCCATGGHAACV

BGTTDCCATGGYAACN
SELEX
Jolma et al.(2013)
RFX3_1
0.758 0.848
RFX3
M03453_2.00
Homo sapiens
BGTTGCTARGCAACS

SGTTGCYTAGCAACV
SELEX
Jolma et al.(2013)
RFX3_2
0.758 0.848
RFX3
M02750_2.00
Homo sapiens
GTTRYYATGG

CCATRRYAAC
SELEX
Jolma et al.(2010)
RFX3_dimer
0.758 0.848
RFX3
M05715_2.00
Homo sapiens
NGTTRYYATRRYAACN

NGTTRYYATRRYAACN
SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1
0.758 0.848
RFX3
M05716_2.00
Homo sapiens
BGTTGCTARGCAACS

SGTTGCYTAGCAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2
0.758 0.848
RFX3
M09361_2.00
Homo sapiens
BGTTRCCATGGYRN

NYRCCATGGYAACV
Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B
0.758 0.848
RFX3
M09627_2.00
Homo sapiens
BNGTTGCCATGGCAAC

GTTGCCATGGCAACNV
Misc
Heinz et al.(2010)
K562-RFX3_SRA012198
0.758 0.848
RFX3
M05717_2.00
Homo sapiens
BGTTRYYATRRYAACV

BGTTRYYATRRYAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1
0.758 0.848
RFX3
M05718_2.00
Homo sapiens
BGTTGCTARGCAACV

BGTTGCYTAGCAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2
0.758 0.848
PHUM046580
M02454_2.00
Pediculus humanus
NGTHDCYANV

BNTRGHDACN
PBM
Weirauch et al.(2014)
pTH9278
0.757 0.873
Rfx
M03959_2.00
Drosophila melanogaster
NGTHRCYATRGYDACN

NGTHRCYATRGYDACN
SELEX
Nitta et al.(2015)
Rfx_1
0.757 0.785
Rfx
M03960_2.00
Drosophila melanogaster
GTTGCTARGCAAC

GTTGCYTAGCAAC
SELEX
Nitta et al.(2015)
Rfx_2
0.757 0.785
Rfx
M03961_2.00
Drosophila melanogaster
BGTWRCCATGGYWACV

BGTWRCCATGGYWACV
SELEX
Nitta et al.(2015)
Rfx_3
0.757 0.785
Rfx
M03962_2.00
Drosophila melanogaster
GTTRCYAWTRGYAAC

GTTRCYAWTRGYAAC
SELEX
Nitta et al.(2015)
Rfx_4
0.757 0.785
Rfx
M03963_2.00
Drosophila melanogaster
GTTGCTARGCAAC

GTTGCYTAGCAAC
SELEX
Nitta et al.(2015)
Rfx_5
0.757 0.785
RFX2
M03454_2.00
Homo sapiens
BGTTRCCATGGYAACV

BGTTRCCATGGYAACV
SELEX
Jolma et al.(2013)
RFX2_1
0.754 0.835
RFX2
M03455_2.00
Homo sapiens
SGTTGCTARGCAACS

SGTTGCYTAGCAACS
SELEX
Jolma et al.(2013)
RFX2_2
0.754 0.835
RFX2
M05719_2.00
Homo sapiens
NGTWDYYATRRHWACN

NGTWDYYATRRHWACN
SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX
0.754 0.835
RFX2
M09362_2.00
Homo sapiens
YNGTTGCCATGGVRACVV

BBGTYBCCATGGCAACNR
Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A
0.754 0.835
RFX2
M09628_2.00
Homo sapiens
BGTTKCCATGGMAAC

GTTKCCATGGMAACV
Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402
0.754 0.835
RFX2
M05720_2.00
Homo sapiens
BGTTRCCATGRYAACV

BGTTRYCATGGYAACV
SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX
0.754 0.835
Rfx2
M03461_2.00
Mus musculus
BGTTRCCATGGYAACV

BGTTRCCATGGYAACV
SELEX
Jolma et al.(2013)
Rfx2_1
0.752 0.823
Rfx2
M03462_2.00
Mus musculus
SGTTGCTARGCAACV

BGTTGCYTAGCAACS
SELEX
Jolma et al.(2013)
Rfx2_2
0.752 0.823
Rfx2
M05888_2.00
Mus musculus
NGTTRCYATGGHDAY

RTHDCCATRGYAACN
SMiLE-seq
Isakova et al.(2017)
RFX2
0.752 0.823
Rfx2
M09366_2.00
Mus musculus
NBYBGTYNCCMTGGCAACNSSS

SSSNGTTGCCAKGGNRACVRVN
Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A
0.752 0.823
daf-19
M00709_2.00
Caenorhabditis elegans
SGTTRCTADG

CHTAGYAACS
PBM
Narasimhan et al.(2015)
pTH10021
0.743 0.722
Rfx4
M00186_2.00
Mus musculus
GTHDYYNNSN

NSNNRRHDAC
PBM
Badis et al.(2009)
Rfx4_3761
0.710 0.684
RFX4
M03456_2.00
Homo sapiens
NGTWRYCATRGHWACN

NGTWDCYATGRYWACN
SELEX
Jolma et al.(2013)
RFX4_1
0.710 0.684
RFX4
M03457_2.00
Homo sapiens
NGTTGCYRRGCAACS

SGTTGCYYRGCAACN
SELEX
Jolma et al.(2013)
RFX4_2
0.710 0.684
RFX4
M05721_2.00
Homo sapiens
BGTWRYCATGRYWACV

BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX
0.710 0.684
RFX4
M05722_2.00
Homo sapiens
BGTWRYCATGRYWACV

BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX
0.710 0.684
RFX4
M02448_2.00
Cavia porcellus
GTHDYYNNGN

NCNNRRHDAC
PBM
Weirauch et al.(2014)
pTH9249
0.710 0.671
Rfx6
M09365_2.00
Mus musculus
BDGTWKCYNDG

CHNRGMAACHV
Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C
0.683 0.595
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CLEC013615-PA RFX 297 375

Links

Other RFX family TFs
Other Cimex lectularius TFs

713 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1Q1_01999 Trichosporon asahii A1Q1_01999 N 0.000
AGABI2DRAFT_197789 Agaricus bisporus AGABI2DRAFT_197789 N 0.000
BN946_scf185001.g47 Trametes cinnabarina BN946_scf185001.g47 N 0.000
BOTBODRAFT_27262 Botryobasidium botryosum BOTBODRAFT_27262 N 0.000
CC1G_03731 Coprinopsis cinerea CC1G_03731 N 0.000
CERSUDRAFT_109864 Ceriporiopsis subvermispora CERSUDRAFT_109864 N 0.000
CERSUDRAFT_114830 Ceriporiopsis subvermispora CERSUDRAFT_114830 N 0.000
CERSUDRAFT_115065 Ceriporiopsis subvermispora CERSUDRAFT_115065 N 0.000
CNG02270 Cryptococcus neoformans CNG02270 N 0.000
CY34DRAFT_31562 Suillus luteus CY34DRAFT_31562 N 0.000
CY34DRAFT_809277 Suillus luteus CY34DRAFT_809277 N 0.000
DACRYDRAFT_39508 Dacryopinax sp DACRYDRAFT_39508 N 0.000
DICSQDRAFT_14849 Dichomitus squalens DICSQDRAFT_14849 N 0.000
estExt_fgeneshMC_kg.C_40263 Mucor circinelloides estExt_fgeneshMC_kg.C_40263 N 0.000
estExt_fgeneshPB_pg.C_140262 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_140262 N 0.000
e_gwh2.25.53.1 Phanerochaete chrysosporium e_gwh2.25.53.1 N 0.000
e_gww2.5.562.1 Phanerochaete chrysosporium e_gww2.5.562.1 N 0.000
FIBRA_07597 Fibroporia radiculosa FIBRA_07597 N 0.000
FOMPIDRAFT_1033652 Fomitopsis pinicola FOMPIDRAFT_1033652 N 0.000
FOMPIDRAFT_1085863 Fomitopsis pinicola FOMPIDRAFT_1085863 N 0.000
FOMPIDRAFT_1145789 Fomitopsis pinicola FOMPIDRAFT_1145789 N 0.000
FOMPIDRAFT_1161920 Fomitopsis pinicola FOMPIDRAFT_1161920 N 0.000
GALMADRAFT_233958 Galerina marginata GALMADRAFT_233958 N 0.000
GLOTRDRAFT_112363 Gloeophyllum trabeum GLOTRDRAFT_112363 N 0.000
GLOTRDRAFT_26554 Gloeophyllum trabeum GLOTRDRAFT_26554 N 0.000
gw1.1.1202.1 Heterobasidion annosum gw1.1.1202.1 N 0.000
gw1.8.218.1 Tremella mesenterica gw1.8.218.1 N 0.000
GYMLUDRAFT_174618 Gymnopus luxurians GYMLUDRAFT_174618 N 0.000
HYDPIDRAFT_99864 Hydnomerulius pinastri HYDPIDRAFT_99864 N 0.000
J056_000870 Wallemia ichthyophaga J056_000870 N 0.000
JAAARDRAFT_103126 Jaapia argillacea JAAARDRAFT_103126 N 0.000
JAAARDRAFT_209121 Jaapia argillacea JAAARDRAFT_209121 N 0.000
K443DRAFT_104168 Laccaria amethystina K443DRAFT_104168 N 0.000
K443DRAFT_676063 Laccaria amethystina K443DRAFT_676063 N 0.000
L804_03638 Cryptococcus gattii L804_03638 N 0.000
LACBIDRAFT_247901 Laccaria bicolor LACBIDRAFT_247901 N 0.000
LACBIDRAFT_300881 Laccaria bicolor LACBIDRAFT_300881 N 0.000
M378DRAFT_155533 Amanita muscaria M378DRAFT_155533 N 0.000
M378DRAFT_34186 Amanita muscaria M378DRAFT_34186 N 0.000
M404DRAFT_1002106 Pisolithus tinctorius M404DRAFT_1002106 N 0.000
M404DRAFT_998133 Pisolithus tinctorius M404DRAFT_998133 N 0.000
M407DRAFT_37211 Tulasnella calospora M407DRAFT_37211 N 0.000
M407DRAFT_60737 Tulasnella calospora M407DRAFT_60737 N 0.000
M413DRAFT_216932 Hebeloma cylindrosporum M413DRAFT_216932 N 0.000
M422DRAFT_29892 Sphaerobolus stellatus M422DRAFT_29892 N 0.000
Moror_1174 Moniliophthora roreri Moror_1174 N 0.000
Moror_346 Moniliophthora roreri Moror_346 N 0.000
Moror_572 Moniliophthora roreri Moror_572 N 0.000
PAXRUDRAFT_15625 Paxillus rubicundulus PAXRUDRAFT_15625 N 0.000
PAXRUDRAFT_33927 Paxillus rubicundulus PAXRUDRAFT_33927 N 0.000
PHACADRAFT_254049 Phanerochaete carnosa PHACADRAFT_254049 N 0.000
PHACADRAFT_83199 Phanerochaete carnosa PHACADRAFT_83199 N 0.000
PHLGIDRAFT_16085 Phlebiopsis gigantea PHLGIDRAFT_16085 N 0.000
PILCRDRAFT_122351 Piloderma croceum PILCRDRAFT_122351 N 0.000
PILCRDRAFT_33349 Piloderma croceum PILCRDRAFT_33349 N 0.000
PISMIDRAFT_283095 Pisolithus microcarpus PISMIDRAFT_283095 N 0.000
PISMIDRAFT_650733 Pisolithus microcarpus PISMIDRAFT_650733 N 0.000
PLEOSDRAFT_1060467 Pleurotus ostreatus PLEOSDRAFT_1060467 N 0.000
POSPLDRAFT_135054 Postia placenta POSPLDRAFT_135054 N 0.000
POSPLDRAFT_135057 Postia placenta POSPLDRAFT_135057 N 0.000
POSPLDRAFT_47293 Postia placenta POSPLDRAFT_47293 N 0.000
POSPLDRAFT_60615 Postia placenta POSPLDRAFT_60615 N 0.000
SCHCODRAFT_269947 Schizophyllum commune SCHCODRAFT_269947 N 0.000
SCHCODRAFT_86194 Schizophyllum commune SCHCODRAFT_86194 N 0.000
SCLCIDRAFT_1225180 Scleroderma citrinum SCLCIDRAFT_1225180 N 0.000
SCLCIDRAFT_36428 Scleroderma citrinum SCLCIDRAFT_36428 N 0.000
SERLA73DRAFT_176212 Serpula lacrymans SERLA73DRAFT_176212 N 0.000
SERLA73DRAFT_66208 Serpula lacrymans SERLA73DRAFT_66208 N 0.000
V565_046740 Rhizoctonia solani V565_046740 N 0.000