LDEC011897 (Leptinotarsa decemlineata)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 LDEC011897 T319068_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Rfx7
M00823_2.00
Mus musculus
GTYRCYRNSB

VSNYRGYRAC
PBM
Weirauch et al.(2013)
pTH3516
0.701 0.610
Rfx7
M00187_2.00
Mus musculus
BGTHDYYRNN

NNYRRHDACV
PBM
Badis et al.(2009)
Rfxdc2_3516
0.701 0.610
RFX7
M05729_2.00
Homo sapiens
BGTTRCYRY

RYRGYAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX
0.701 0.610
RFX7
M05730_2.00
Homo sapiens
BGTTGCYRB

VYRGCAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX
0.701 0.610
RFX5
M03458_2.00
Homo sapiens
BGTTRCYATRGYAACV

BGTTRCYATRGYAACV
SELEX
Jolma et al.(2013)
RFX5_1
0.689 0.519
RFX5
M03459_2.00
Homo sapiens
BGTTGCYATGGYAACV

BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_2
0.689 0.519
RFX5
M03460_2.00
Homo sapiens
BGTTGCYATGGYAACV

BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_3
0.689 0.519
RFX5
M05725_2.00
Homo sapiens
BGTTRCYANGBGTTGCYRN

NYRGCAACVCNTRGYAACV
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1
0.689 0.519
RFX5
M05726_2.00
Homo sapiens
NYRVYAACSGTTRCYAN

NTRGYAACSGTTRBYRN
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2
0.689 0.519
RFX5
M08009_2.00
Homo sapiens
KCRBYDGTTRCYRRG

CYYRGYAACHRVYGM
ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford
0.689 0.519
RFX5
M08010_2.00
Homo sapiens
DBVBYDGTTGCYRGGBVRR

YYBVCCYRGCAACHRVBVH
ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford
0.689 0.519
RFX5
M08011_2.00
Homo sapiens
TCVBYDGTTDCYRDG

CHYRGHAACHRVBGA
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford
0.689 0.519
RFX5
M08012_2.00
Homo sapiens
YDGTTRCYRKGBVRV

BYBVCMYRGYAACHR
ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford
0.689 0.519
RFX5
M09364_2.00
Homo sapiens
VNNVBYDGTTGCYRKGNVRV

BYBNCMYRGCAACHRVBNNB
Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A
0.689 0.519
RFX5
M09629_2.00
Homo sapiens
NDGTTRCYADGV

BCHTRGYAACHN
Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477
0.689 0.519
RFX5
M11249_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_03
0.689 0.519
RFX5
M11250_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_05
0.689 0.519
RFX5
M05727_2.00
Homo sapiens
BGTYRYYRNGBGTTGYYRN

NYRRCAACVCNYRRYRACV
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1
0.689 0.519
RFX5
M05728_2.00
Homo sapiens
NTRGYAASSGTYRBYRN

NYRVYRACSSTTRCYAN
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2
0.689 0.519
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LDEC011897-PA RFX 121 197

Links

Other RFX family TFs
Other Leptinotarsa decemlineata TFs

224 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Rfx7 Mus musculus ENSMUSG00000037674 D 0.701
RFX5 Homo sapiens ENSG00000143390 D 0.689
RFX7 Homo sapiens ENSG00000181827 D 0.701
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.708
Smp_040350 Schistosoma mansoni Smp_040350 I 0.708
SINV24627 Solenopsis invicta SINV24627 I 0.748
PHUM035280 Pediculus humanus PHUM035280 I 0.740
NV23037 Nasonia vitripennis NV23037 I 0.746
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.702
MCINX003210 Melitaea cinxia MCINX003210 I 0.733
LotgiG138119 Lottia gigantea LotgiG138119 I 0.698
L798_03377 Zootermopsis nevadensis L798_03377 I 0.743
KGM_16732 Danaus plexippus KGM_16732 I 0.737
KGM_13721 Danaus plexippus KGM_13721 I 0.652
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.695
TC008959 Tribolium castaneum TC008959 I 0.759
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.651
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.653
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.723
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.693
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.684
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.693
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.696
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.685
Aan_R011989 Calypte anna Aan_R011989 I 0.696
Aan_R010941 Calypte anna Aan_R010941 I 0.682
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.707
ISCW001129 Ixodes scapularis ISCW001129 I 0.694
HMEL011744 Heliconius melpomene HMEL011744 I 0.733
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.702
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.691
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.701
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.698
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.689
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.701
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.688
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.695
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.693
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.695
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.694
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.693
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.692
CG9727 Drosophila melanogaster FBgn0037445 I 0.730
GB49419 Apis mellifera GB49419 I 0.748
GE24099 Drosophila yakuba FBgn0241238 I 0.730
GK13786 Drosophila willistoni FBgn0215794 I 0.730
GJ22650 Drosophila virilis FBgn0209754 I 0.730
GD19544 Drosophila simulans FBgn0191039 I 0.730
GM10553 Drosophila sechellia FBgn0165499 I 0.730
GL22063 Drosophila persimilis FBgn0159655 I 0.730
GI24583 Drosophila mojavensis FBgn0147305 I 0.730
GH18082 Drosophila grimshawi FBgn0125550 I 0.729
GG10435 Drosophila erecta FBgn0102744 I 0.730
GF16654 Drosophila ananassae FBgn0093675 I 0.730
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.730
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.696
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.689
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.706
MDOA009335 Musca domestica MDOA009335 I 0.731
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.729
ASIS020285 Anopheles sinensis ASIS020285 I 0.729
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.729
AMIN003942 Anopheles minimus AMIN003942 I 0.729
AMEM009524 Anopheles merus AMEM009524 I 0.729
AMEC002251 Anopheles melas AMEC002251 I 0.729
AFUN011072 Anopheles funestus AFUN011072 I 0.729
AFAF011654 Anopheles farauti AFAF011654 I 0.730
AEPI006624 Anopheles epiroticus AEPI006624 I 0.729
ADIR010232 Anopheles dirus ADIR010232 I 0.729
A_01977 Schistosoma haematobium A_01977 I 0.708
csin102559 Clonorchis sinensis csin102559 I 0.700
D915_00887 Fasciola hepatica D915_00887 I 0.661
TsM_000553100 Taenia solium TsM_000553100 I 0.706
T265_11740 Opisthorchis viverrini T265_11740 I 0.700
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.704
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.661
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.709
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.712
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.712
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.706
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.659
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.706
DILT_0001462801 Diphyllobothrium latum DILT_0001462801 I 0.656
ACUA017169 Anopheles culicifacies ACUA017169 I 0.729
ACOM036649 Anopheles coluzzii ACOM036649 I 0.729
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.698
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.693
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.690
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.681
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.662
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.694
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.690
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.748
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.696
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.688
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.696
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.698
CLEC011984 Cimex lectularius CLEC011984 I 0.732
LCUP014592 Lucilia cuprina LCUP014592 I 0.730
ACHR008891 Anopheles christyi ACHR008891 I 0.729
AATE016751 Anopheles atroparvus AATE016751 I 0.729
AARA004226 Anopheles arabiensis AARA004226 I 0.729
AALB008384 Anopheles albimanus AALB008384 I 0.729
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.685
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.679
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.688
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.701
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.711
SMU15015144 Schmidtea mediterranea SMU15015144 I 0.652
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.704
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.689
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.689
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.690
RFX5 Echinops telfairi ENSETEG00000013503 I 0.690
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.690
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.685
RFX5 Equus caballus ENSECAG00000024774 I 0.689
RFX7 Equus caballus ENSECAG00000002379 I 0.696
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.689
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.701
RFX7 Danio rerio ENSDARG00000103691 I 0.701
rfx7 Danio rerio ENSDARG00000077237 I 0.703
rfx5 Danio rerio ENSDARG00000063258 I 0.692
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.701
RFX7 Echinops telfairi ENSETEG00000015037 I 0.686
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.688
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.701
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.689
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.701
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.701
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.702
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.700
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.689
RFX5 Gallus gallus ENSGALG00000000836 I 0.690
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.701
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.702
RFX7 Felis catus ENSFCAG00000029408 I 0.701
RFX5 Felis catus ENSFCAG00000005568 I 0.689
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.689
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.689
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.701
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.694
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.701
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.736
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.726
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.684
CapteG131555 Capitella teleta CapteG131555 I 0.694
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.727
AGAP013226 Anopheles gambiae AGAP013226 I 0.729
ADAC008404 Anopheles darlingi ADAC008404 I 0.729
ACEP24602 Atta cephalotes ACEP24602 I 0.748
AAEL013752 Aedes aegypti AAEL013752 I 0.726
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.689
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.701
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.689
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.689
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.686
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.701
RFX7 Canis familiaris ENSCAFG00000016029 I 0.701
RFX5 Canis familiaris ENSCAFG00000012661 I 0.689
RFX5 Bos taurus ENSBTAG00000017580 I 0.689
RFX7 Bos taurus ENSBTAG00000000565 I 0.701
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.701
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.654
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.702
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.701
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.726
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.690
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.701
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.689
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.706
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.692
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.691
RFX5 Procavia capensis ENSPCAG00000011056 I 0.688
RFX7 Procavia capensis ENSPCAG00000004974 I 0.701
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.701
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.689
rfx7 Oryzias latipes ENSORLG00000008583 I 0.695
RFX7 Oryzias latipes ENSORLG00000005342 I 0.702
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.701
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.680
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.689
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.652
RFX5 Sus scrofa ENSSSCG00000006625 I 0.689
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.688
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.701
RFX7 Sorex araneus ENSSARG00000010801 I 0.695
RFX5 Sorex araneus ENSSARG00000000750 I 0.690
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.701
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.689
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.689
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.700
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.701
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.688
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.655
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.702
Rfx5 Mus musculus ENSMUSG00000005774 I 0.689
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.689
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.701
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.701
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.695
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.689
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.697
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.690
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.701
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.686
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.688
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.653
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.701
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.689
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.701
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.692
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.692
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.698
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.689
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.701
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.702
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.689
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.689
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.698
MESCA006788 Megaselia scalaris MESCA006788 N 0.656
AQUA006869 Anopheles quadriannulatus AQUA006869 N 0.665
LLOJ009233 Lutzomyia longipalpis LLOJ009233 N 0.661
MESCA005939 Megaselia scalaris MESCA005939 N 0.662