CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L898_g21445
(
Steinernema monticolum
)
RFX
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02257 (RFX_DNA_binding)
IPR003150
L898_g21445
T319217_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Rfx2
M03461_2.00
Mus musculus
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV
SELEX
Jolma et al.(2013)
Rfx2_1
0.651
0.288
Rfx2
M03462_2.00
Mus musculus
SGTTGCTARGCAACV
BGTTGCYTAGCAACS
SELEX
Jolma et al.(2013)
Rfx2_2
0.651
0.288
Rfx2
M05888_2.00
Mus musculus
NGTTRCYATGGHDAY
RTHDCCATRGYAACN
SMiLE-seq
Isakova et al.(2017)
RFX2
0.651
0.288
Rfx2
M09366_2.00
Mus musculus
NBYBGTYNCCMTGGCAACNSSS
SSSNGTTGCCAKGGNRACVRVN
Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A
0.651
0.288
RFX1
M02447_2.00
Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC
PBM
Weirauch et al.(2014)
pTH9223
0.650
0.288
RFX1
M02451_2.00
Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC
PBM
Weirauch et al.(2014)
pTH9385
0.650
0.288
RFX1
M05723_2.00
Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV
SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX
0.650
0.288
Rfx1
M08162_2.00
Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC
ChIP-seq
Mathelier et al.(2014)
MA0509.1
0.650
0.288
RFX1
M09363_2.00
Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B
0.650
0.288
Rfx1
M09367_2.00
Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A
0.650
0.288
RFX1
M11245_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EFC_Q6
0.650
0.288
RFX1
M11246_2.00
Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_01
0.650
0.288
RFX1
M11247_2.00
Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_02
0.650
0.288
RFX1
M11248_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX1_Q6
0.650
0.288
RFX1
M05724_2.00
Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX
0.650
0.288
For this family, TFs with SR scores >
0.650
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L898_g21445.t1
RFX
493
558
LLSKCENLSQHHNYTVNRNQLLQHYANLTNEMSERIRAISVNATNFGELIDSLYFDTVSQNLSQTA
Links
Other
RFX
family TFs
Other
Steinernema monticolum
TFs
65 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy