CpipJ_CPIJ019508 (Culex pipiens)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 CpipJ_CPIJ019508 T319281_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
lz
M03964_2.00
Drosophila melanogaster
HRACCGCAAHM

KDTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_1
0.846 0.846
lz
M03965_2.00
Drosophila melanogaster
HVACCRCARWAACCRCAV

BTGYGGTTWYTGYGGTBD
SELEX
Nitta et al.(2015)
lz_2
0.846 0.846
lz
M03966_2.00
Drosophila melanogaster
WRACCRCAWTAACCRCAA

TTGYGGTTAWTGYGGTYW
SELEX
Nitta et al.(2015)
lz_3
0.846 0.846
lz
M03967_2.00
Drosophila melanogaster
HRACCGCAAAACCRCAR

YTGYGGTTTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_4
0.846 0.846
run
M06444_2.00
Drosophila melanogaster
WAACCGCAR

YTGCGGTTW
B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300
0.808 0.808
Runx2
M01307_2.00
Mus musculus
NHDACCRCAN

NTGYGGTHDN
PBM
Lambert et al.(2019)
pTH9764
0.731 0.731
RUNX2
M03468_2.00
Homo sapiens
HRACCGCAAACCRCRD

HYGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX2_1
0.731 0.731
RUNX2
M03469_2.00
Homo sapiens
HRACCRCADWWACCRCAD

HTGYGGTWWHTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX2_2
0.731 0.731
RUNX2
M03470_2.00
Homo sapiens
WAACCRCAR

YTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX2_3
0.731 0.731
RUNX3
M03464_2.00
Homo sapiens
HRACCGCAAACCRCAN

NTGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX3_1
0.731 0.731
RUNX3
M03465_2.00
Homo sapiens
WAACCRCARN

NYTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX3_2
0.731 0.731
RUNX3
M03466_2.00
Homo sapiens
HDACCRCADWAACCRCRN

NYGYGGTTWHTGYGGTHD
SELEX
Jolma et al.(2013)
RUNX3_3
0.731 0.731
RUNX3
M03467_2.00
Homo sapiens
HRACCRCAAH

DTTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX3_4
0.731 0.731
RUNX3
M02751_2.00
Homo sapiens
WACCRCAM

KTGYGGTW
SELEX
Jolma et al.(2010)
RUNX3_monomer
0.731 0.731
RUNX2
M05733_2.00
Homo sapiens
NHRACCRCADWAACCRCAVN

NBTGYGGTTWHTGYGGTYDN
SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX
0.731 0.731
RUNX3
M05731_2.00
Homo sapiens
YWAACCGCAAAAACCGCARV

BYTGCGGTTTTTGCGGTTWR
SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX
0.731 0.731
RUNX2
M09370_2.00
Homo sapiens
MMHAACCACAVVMH

DKBBTGTGGTTDKK
Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A
0.731 0.731
RUNX3
M09369_2.00
Homo sapiens
HAACCACARN

NYTGTGGTTD
Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A
0.731 0.731
Runx2
M09373_2.00
Mus musculus
VWRACCACARVV

BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A
0.731 0.731
Runx3
M09374_2.00
Mus musculus
NHRACCACARVN

NBYTGTGGTYDN
Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A
0.731 0.731
RUNX2
M09630_2.00
Homo sapiens
NHVACCACANNN

NNNTGTGGTBDN
Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889
0.731 0.731
RUNX3
M11252_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3_01
0.731 0.731
RUNX3
M11253_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3
0.731 0.731
RUNX3
M11254_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q4
0.731 0.731
RUNX2
M11255_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q3
0.731 0.731
RUNX2
M11256_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q6
0.731 0.731
RUNX2
M11257_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OSF2_Q6
0.731 0.731
RUNX2
M05734_2.00
Homo sapiens
NWAACCACRAAAACCACRRN

NYYGTGGTTTTYGTGGTTWN
SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX
0.731 0.731
RUNX3
M05732_2.00
Homo sapiens
HWAACCACRAAAACCACRARN

NYTYGTGGTTTTYGTGGTTWD
SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX
0.731 0.731
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ019508-RA Runt 1 26

Links

Other Runt family TFs
Other Culex pipiens TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000010613 Ailuropoda melanoleuca ENSAMEG00000010613 I 0.000
IRF7 Bos taurus ENSBTAG00000047680 I 0.000
IRF7 Callithrix jacchus ENSCJAG00000012124 I 0.000
ENSCSAG00000010883 Chlorocebus sabaeus ENSCSAG00000010883 I 0.000
IRF7 Dasypus novemcinctus ENSDNOG00000006293 I 0.000
Irf7 Dipodomys ordii ENSDORG00000014096 I 0.000
IRF7 Equus caballus ENSECAG00000009744 I 0.000
IRF7 Echinops telfairi ENSETEG00000004078 I 0.000
IRF7 Felis catus ENSFCAG00000031821 I 0.000
IRF7 Homo sapiens ENSG00000185507 D 0.000
IRF7 Gorilla gorilla ENSGGOG00000008341 I 0.000
IRF7 Loxodonta africana ENSLAFG00000032120 I 0.000
IRF7 Macaca mulatta ENSMMUG00000004014 I 0.000
ENSMPUG00000008845 Mustela putorius furo ENSMPUG00000008845 I 0.000
Irf7 Mus musculus ENSMUSG00000025498 D 0.000
ENSNLEG00000008419 Nomascus leucogenys ENSNLEG00000008419 I 0.000
ENSOARG00000006626 Ovis aries ENSOARG00000006626 I 0.000
IRF7 Oryctolagus cuniculus ENSOCUG00000002339 I 0.000
IRF7 Otolemur garnettii ENSOGAG00000004986 I 0.000
ENSP00000329411-D1 Bos grunniens ENSP00000329411-D1 I 0.000
ENSPANG00000007390 Papio anubis ENSPANG00000007390 I 0.000
IRF7 Procavia capensis ENSPCAG00000010286 I 0.000
IRF7 Pan troglodytes ENSPTRG00000003126 I 0.000
IRF7 Pteropus vampyrus ENSPVAG00000006873 I 0.000
Irf7 Rattus norvegicus ENSRNOG00000017414 I 0.000
IRF7 Sus scrofa ENSSSCG00000012853 I 0.000
ENSSTOG00000005711 Ictidomys tridecemlineatus ENSSTOG00000005711 I 0.000
IRF7 Tursiops truncatus ENSTTRG00000011148 I 0.000