RUNX3 (Bos taurus)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 ENSBTAG00000019800 T319341_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RUNX3
M03464_2.00
Homo sapiens
HRACCGCAAACCRCAN

NTGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX3_1
0.989 0.989
RUNX3
M03465_2.00
Homo sapiens
WAACCRCARN

NYTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX3_2
0.989 0.989
RUNX3
M03466_2.00
Homo sapiens
HDACCRCADWAACCRCRN

NYGYGGTTWHTGYGGTHD
SELEX
Jolma et al.(2013)
RUNX3_3
0.989 0.989
RUNX3
M03467_2.00
Homo sapiens
HRACCRCAAH

DTTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX3_4
0.989 0.989
RUNX3
M02751_2.00
Homo sapiens
WACCRCAM

KTGYGGTW
SELEX
Jolma et al.(2010)
RUNX3_monomer
0.989 0.989
RUNX3
M05731_2.00
Homo sapiens
YWAACCGCAAAAACCGCARV

BYTGCGGTTTTTGCGGTTWR
SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX
0.989 0.989
RUNX3
M09369_2.00
Homo sapiens
HAACCACARN

NYTGTGGTTD
Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A
0.989 0.989
Runx3
M09374_2.00
Mus musculus
NHRACCACARVN

NBYTGTGGTYDN
Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A
0.989 0.989
RUNX3
M11252_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3_01
0.989 0.989
RUNX3
M11253_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3
0.989 0.989
RUNX3
M11254_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q4
0.989 0.989
RUNX3
M05732_2.00
Homo sapiens
HWAACCACRAAAACCACRARN

NYTYGTGGTTTTYGTGGTTWD
SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX
0.989 0.989
Runx2
M01307_2.00
Mus musculus
NHDACCRCAN

NTGYGGTHDN
PBM
Lambert et al.(2019)
pTH9764
0.967 0.967
RUNX2
M03468_2.00
Homo sapiens
HRACCGCAAACCRCRD

HYGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX2_1
0.967 0.967
RUNX2
M03469_2.00
Homo sapiens
HRACCRCADWWACCRCAD

HTGYGGTWWHTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX2_2
0.967 0.967
RUNX2
M03470_2.00
Homo sapiens
WAACCRCAR

YTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX2_3
0.967 0.967
RUNX2
M05733_2.00
Homo sapiens
NHRACCRCADWAACCRCAVN

NBTGYGGTTWHTGYGGTYDN
SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX
0.967 0.967
RUNX2
M09370_2.00
Homo sapiens
MMHAACCACAVVMH

DKBBTGTGGTTDKK
Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A
0.967 0.967
Runx2
M09373_2.00
Mus musculus
VWRACCACARVV

BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A
0.967 0.967
RUNX2
M09630_2.00
Homo sapiens
NHVACCACANNN

NNNTGTGGTBDN
Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889
0.967 0.967
RUNX2
M11255_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q3
0.967 0.967
RUNX2
M11256_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q6
0.967 0.967
RUNX2
M11257_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OSF2_Q6
0.967 0.967
RUNX2
M05734_2.00
Homo sapiens
NWAACCACRAAAACCACRRN

NYYGTGGTTTTYGTGGTTWN
SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX
0.967 0.967
Runx1
M08163_2.00
Mus musculus
HRRCCACARVN

NBYTGTGGYYD
ChIP-seq
Mathelier et al.(2014)
MA0002.2
0.934 0.934
RUNX1
M09371_2.00
Homo sapiens
NWAACCACARV

BYTGTGGTTWN
Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A
0.934 0.934
Runx1
M09372_2.00
Mus musculus
VWRACCACARVV

BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A
0.934 0.934
RUNX1
M09632_2.00
Homo sapiens
HAACCACADV

BHTGTGGTTD
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180
0.934 0.934
RUNX1
M09631_2.00
Homo sapiens
VCCACWTCCTBY

RVAGGAWGTGGB
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954
0.934 0.934
Runx1
M09633_2.00
Mus musculus
NWAACCACAR

YTGTGGTTWN
Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178
0.934 0.934
RUNX1
M11258_2.00
Homo sapiens
ACCRCA

TGYGGT
Transfac
Matys et al.(2006)
V$AML1_01
0.934 0.934
RUNX1
M11259_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4_01
0.934 0.934
RUNX1
M11260_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4_02
0.934 0.934
RUNX1
M11261_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4
0.934 0.934
RUNX1
M11262_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q5
0.934 0.934
RUNX1
M11263_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q6
0.934 0.934
lz
M03964_2.00
Drosophila melanogaster
HRACCGCAAHM

KDTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_1
0.747 0.747
lz
M03965_2.00
Drosophila melanogaster
HVACCRCARWAACCRCAV

BTGYGGTTWYTGYGGTBD
SELEX
Nitta et al.(2015)
lz_2
0.747 0.747
lz
M03966_2.00
Drosophila melanogaster
WRACCRCAWTAACCRCAA

TTGYGGTTAWTGYGGTYW
SELEX
Nitta et al.(2015)
lz_3
0.747 0.747
lz
M03967_2.00
Drosophila melanogaster
HRACCGCAAAACCRCAR

YTGYGGTTTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_4
0.747 0.747
run
M06444_2.00
Drosophila melanogaster
WAACCGCAR

YTGCGGTTW
B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300
0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000026378 Runt 1 91

Links

Other Runt family TFs
Other Bos taurus TFs

103 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Runx2 Mus musculus ENSMUSG00000039153 D 0.945
run Drosophila melanogaster FBgn0003300 D 0.714
Runx1 Mus musculus ENSMUSG00000022952 D 0.912
RUNX2 Homo sapiens ENSG00000124813 D 0.945
RPRC005391 Rhodnius prolixus RPRC005391 I 0.791
SINV13317 Solenopsis invicta SINV13317 I 0.780
TC006536 Tribolium castaneum TC006536 I 0.802
TC006542 Tribolium castaneum TC006542 I 0.758
tetur01g02340 Tetranychus urticae tetur01g02340 I 0.791
Aan_R002212 Calypte anna Aan_R002212 I 0.770
Aan_R005895 Calypte anna Aan_R005895 I 1.000
Aan_R007315 Calypte anna Aan_R007315 I 0.944
Afo_R004888 Aptenodytes forsteri Afo_R004888 I 0.944
ENSTNIG00000009855 Tetraodon nigroviridis ENSTNIG00000009855 I 0.736
PHUM333310 Pediculus humanus PHUM333310 I 0.714
runx3 Tetraodon nigroviridis ENSTNIG00000016911 I 0.923
runx2 Takifugu rubripes ENSTRUG00000003501 I 0.934
runx1 Takifugu rubripes ENSTRUG00000012611 I 0.890
ENSTSYG00000005097 Tarsius syrichta ENSTSYG00000005097 I 0.901
RUNX1 Tursiops truncatus ENSTTRG00000014160 I 0.901
ML03045a Mnemiopsis leidyi ML03045a I 0.758
HMEL009842 Heliconius melpomene HMEL009842 I 0.744
KGM_21067 Danaus plexippus KGM_21067 I 0.758
MCINX000302 Melitaea cinxia MCINX000302 I 0.791
MESCA007078 Megaselia scalaris MESCA007078 I 0.703
MESCA007079 Megaselia scalaris MESCA007079 I 0.800
Afo_R008955 Aptenodytes forsteri Afo_R008955 I 1.000
Afo_R012718 Aptenodytes forsteri Afo_R012718 I 0.865
LCUP002647 Lucilia cuprina LCUP002647 I 0.744
LCUP002656 Lucilia cuprina LCUP002656 I 0.714
runx2.L Xenopus laevis XB-GENE-864817 I 0.923
XP_002939386 Xenopus tropicalis XP_002939386 I 0.934
XP_002939387 Xenopus tropicalis XP_002939387 I 0.934
AALB007752 Anopheles albimanus AALB007752 I 0.700
AARA011472 Anopheles arabiensis AARA011472 I 0.725
ACOM031089 Anopheles coluzzii ACOM031089 I 0.725
AMEC007551 Anopheles melas AMEC007551 I 0.725
AMEM004753 Anopheles merus AMEM004753 I 0.725
AQUA009970 Anopheles quadriannulatus AQUA009970 I 0.725
Tal_R011874 Tyto alba Tal_R011874 I 0.967
Hsal_12319--XP_394016.2_APIME Harpegnathos saltator Hsal_12319--XP_394016.2_APIME I 0.780
Alligator_sinensis_CCG010991.1 Alligator sinensis Alligator_sinensis_CCG010991.1 I 0.987
Brh_R000794 Buceros rhinoceros Brh_R000794 I 0.967
Brh_R001637 Buceros rhinoceros Brh_R001637 I 0.944
Cflo_03909--XP_394016.2_APIME Camponotus floridanus Cflo_03909--XP_394016.2_APIME I 0.780
ENSBTAP00000006227-D1 Bos grunniens ENSBTAP00000006227-D1 I 0.978
ENSP00000352514 Macaca fascicularis ENSP00000352514 I 0.838
ENSP00000382800 Macaca fascicularis ENSP00000382800 I 0.857
Gfo_R000714 Geospiza fortis Gfo_R000714 I 0.871
Gfo_R011596 Geospiza fortis Gfo_R011596 I 0.744
Gfo_R013848 Geospiza fortis Gfo_R013848 I 0.947
Hsal_04635--XP_394013.3_APIME Harpegnathos saltator Hsal_04635--XP_394013.3_APIME I 0.758
PPAI006591 Phlebotomus papatasi PPAI006591 I 0.708
ACEP16400 Atta cephalotes ACEP16400 I 0.738
runx2a Danio rerio ENSDARG00000040261 I 0.978
runx2b Danio rerio ENSDARG00000059233 I 0.956
CABZ01102124.1 Danio rerio ENSDARG00000103592 I 0.921
RUNX1 Dasypus novemcinctus ENSDNOG00000015041 I 0.923
ENSFALG00000001493 Ficedula albicollis ENSFALG00000001493 I 0.967
RUNX2 Felis catus ENSFCAG00000022480 I 0.978
ENSFCAG00000029032 Felis catus ENSFCAG00000029032 I 0.938
ENSGACG00000011721 Gasterosteus aculeatus ENSGACG00000011721 I 0.747
runx2b Gasterosteus aculeatus ENSGACG00000012322 I 0.945
ENSGALG00000026484 Gallus gallus ENSGALG00000026484 I 0.863
RUNX1 Callithrix jacchus ENSCJAG00000002816 I 0.947
ENSCING00000002253 Ciona intestinalis ENSCING00000002253 I 0.853
ENSCAFG00000031052 Canis familiaris ENSCAFG00000031052 I 0.947
ACEP16410 Atta cephalotes ACEP16410 I 0.714
ACYPI001442 Acyrthosiphon pisum ACYPI001442 I 0.758
ACYPI007541 Acyrthosiphon pisum ACYPI007541 I 0.769
AGAP001094 Anopheles gambiae AGAP001094 I 0.725
BGIBMGA008906 Bombyx mori BGIBMGA008906 I 0.769
RUNX3 Anolis carolinensis ENSACAG00000017855 I 0.989
ENSAMEG00000009223 Ailuropoda melanoleuca ENSAMEG00000009223 I 0.978
ENSAMXG00000017349 Astyanax mexicanus ENSAMXG00000017349 I 0.956
ENSAPLG00000007026 Anas platyrhynchos ENSAPLG00000007026 I 0.895
ENSAPLG00000011653 Anas platyrhynchos ENSAPLG00000011653 I 0.967
ENSLACG00000013776 Latimeria chalumnae ENSLACG00000013776 I 0.901
ENSLACG00000015930 Latimeria chalumnae ENSLACG00000015930 I 0.879
ENSOANG00000031074 Ornithorhynchus anatinus ENSOANG00000031074 I 0.960
ENSOARG00000013599 Ovis aries ENSOARG00000013599 I 0.934
ENSOCUG00000011739 Oryctolagus cuniculus ENSOCUG00000011739 I 0.978
ENSPPYG00000001714 Pongo abelii ENSPPYG00000001714 I 0.978
ENSPSIG00000014293 Pelodiscus sinensis ENSPSIG00000014293 I 0.957
RUNX1 Pteropus vampyrus ENSPVAG00000001606 I 0.934
ENSSHAG00000012559 Sarcophilus harrisii ENSSHAG00000012559 I 1.000
ENSSHAG00000014782 Sarcophilus harrisii ENSSHAG00000014782 I 0.934
ENSSSCG00000025551 Sus scrofa ENSSSCG00000025551 I 0.982
ENSSTOG00000020082 Ictidomys tridecemlineatus ENSSTOG00000020082 I 0.930
RUNX2 Ornithorhynchus anatinus ENSOANG00000008265 I 0.978
ENSNLEG00000009021 Nomascus leucogenys ENSNLEG00000009021 I 0.989
ENSNLEG00000003611 Nomascus leucogenys ENSNLEG00000003611 I 0.765
RUNX2 Loxodonta africana ENSLAFG00000005054 I 0.978
ENSMGAG00000002035 Meleagris gallopavo ENSMGAG00000002035 I 1.000
RUNX2 Meleagris gallopavo ENSMGAG00000014267 I 0.967
ENSMGAG00000014534 Meleagris gallopavo ENSMGAG00000014534 I 0.922
RUNX2 Myotis lucifugus ENSMLUG00000000514 I 0.978
RUNX1 Macaca mulatta ENSMMUG00000001649 I 0.947
RUNX1 Monodelphis domestica ENSMODG00000021051 I 0.934
ENSMPUG00000001340 Mustela putorius furo ENSMPUG00000001340 I 0.923
ENSMPUG00000012508 Mustela putorius furo ENSMPUG00000012508 I 0.759
ENSMPUG00000015804 Mustela putorius furo ENSMPUG00000015804 I 0.989
RUNX2 Tupaia belangeri ENSTBEG00000000948 I 0.978