ENSCSAVG00000004072 (Ciona savignyi)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 ENSCSAVG00000004072 T319357_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.762 0.762
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.762 0.762
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.762 0.762
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.762 0.762
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.762 0.762
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.762 0.762
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.762 0.762
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.762 0.762
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.762 0.762
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.762 0.762
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.762 0.762
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.762 0.762
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.762 0.762
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.762 0.762
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.762 0.762
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.762 0.762
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.762 0.762
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.762 0.762
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.762 0.762
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.762 0.762
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.762 0.762
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.762 0.762
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.762 0.762
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.762 0.762
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.746 0.746
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.746 0.746
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.746 0.746
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.746 0.746
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.746 0.746
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.746 0.746
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.746 0.746
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.746 0.746
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.746 0.746
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.746 0.746
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.746 0.746
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.746 0.746
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000006826 Runt 27 156

Links

Other Runt family TFs
Other Ciona savignyi TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSOANG00000031074 Ornithorhynchus anatinus ENSOANG00000031074 I 0.840
Aan_R007315 Calypte anna Aan_R007315 I 0.822
Afo_R004888 Aptenodytes forsteri Afo_R004888 I 0.822
Brh_R001637 Buceros rhinoceros Brh_R001637 I 0.822
ENSAPLG00000007026 Anas platyrhynchos ENSAPLG00000007026 I 0.816
RUNX3 Anolis carolinensis ENSACAG00000017855 I 0.793
ENSAPLG00000011653 Anas platyrhynchos ENSAPLG00000011653 I 0.791
Tal_R011874 Tyto alba Tal_R011874 I 0.791
RUNX2 Meleagris gallopavo ENSMGAG00000014267 I 0.791
Brh_R000794 Buceros rhinoceros Brh_R000794 I 0.791
ENSPSIG00000014293 Pelodiscus sinensis ENSPSIG00000014293 I 0.783
runx1 Takifugu rubripes ENSTRUG00000012611 I 0.777
runx3 Danio rerio ENSDARG00000052826 I 0.777
runx3 Xenopus tropicalis XB-GENE-487784 I 0.777
ENSPFOG00000003997 Poecilia formosa ENSPFOG00000003997 I 0.777
runx3 Gasterosteus aculeatus ENSGACG00000007301 I 0.777
runx3.L Xenopus laevis XB-GENE-6487158 I 0.777
ENSAMXG00000004048 Astyanax mexicanus ENSAMXG00000004048 I 0.777
ENSXMAG00000018835 Xiphophorus maculatus ENSXMAG00000018835 I 0.777
ENSONIG00000008210 Oreochromis niloticus ENSONIG00000008210 I 0.777
ENSAMXG00000012244 Astyanax mexicanus ENSAMXG00000012244 I 0.777
runx3 Oryzias latipes ENSORLG00000017515 I 0.777
ENSP00000300305 Macaca fascicularis ENSP00000300305 I 0.769
ENSLACG00000013776 Latimeria chalumnae ENSLACG00000013776 I 0.769
ENSGMOG00000014088 Gadus morhua ENSGMOG00000014088 I 0.769
ENSGALG00000026821 Gallus gallus ENSGALG00000026821 I 0.769
ENSP00000409227-D1 Bos grunniens ENSP00000409227-D1 I 0.769
ENSLACG00000015930 Latimeria chalumnae ENSLACG00000015930 I 0.769
ENSPSIG00000012728 Pelodiscus sinensis ENSPSIG00000012728 I 0.769
ENSLOCG00000002744 Lepisosteus oculatus ENSLOCG00000002744 I 0.769
Cmyd_10020845 Chelonia mydas Cmyd_10020845 I 0.769
ENSMODG00000013941 Monodelphis domestica ENSMODG00000013941 I 0.769
Pvit_17193 Pogona vitticeps Pvit_17193 I 0.769
ENSPPYG00000001714 Pongo abelii ENSPPYG00000001714 I 0.769
runx3 Takifugu rubripes ENSTRUG00000001517 I 0.769
ENSONIG00000004914 Oreochromis niloticus ENSONIG00000004914 I 0.769
RUNX3 Taeniopygia guttata ENSTGUG00000001130 I 0.769
RUNX3 Loxodonta africana ENSLAFG00000008382 I 0.769
ENSGMOG00000019132 Gadus morhua ENSGMOG00000019132 I 0.769
RUNX3 Dasypus novemcinctus ENSDNOG00000043493 I 0.769
RUNX1 Equus caballus ENSECAG00000003462 I 0.769
estExt_fgenesh2_kg.C_3770001 Branchiostoma floridae estExt_fgenesh2_kg.C_3770001 I 0.769
XP_002939387 Xenopus tropicalis XP_002939387 I 0.769
runx3 Tetraodon nigroviridis ENSTNIG00000016911 I 0.769
RUNX1 Bos taurus ENSBTAG00000004742 I 0.769
XP_002939386 Xenopus tropicalis XP_002939386 I 0.769
ENSAPLG00000016439 Anas platyrhynchos ENSAPLG00000016439 I 0.769
ENSFALG00000000470 Ficedula albicollis ENSFALG00000000470 I 0.769
estExt_fgenesh2_kg.C_750001 Branchiostoma floridae estExt_fgenesh2_kg.C_750001 I 0.769
ENSTNIG00000018690 Tetraodon nigroviridis ENSTNIG00000018690 I 0.762
RUNX1 Otolemur garnettii ENSOGAG00000033362 I 0.762
XP_002939388 Xenopus tropicalis XP_002939388 I 0.762
ENSPSIG00000017547 Pelodiscus sinensis ENSPSIG00000017547 I 0.762
Runx1 Rattus norvegicus ENSRNOG00000001704 I 0.762
RUNX3 Otolemur garnettii ENSOGAG00000025633 I 0.762
Runx3 Rattus norvegicus ENSRNOG00000054217 I 0.762
RUNX3 Canis familiaris ENSCAFG00000012903 I 0.762
RUNX1 Canis familiaris ENSCAFG00000009596 I 0.762
RUNX1 Oryctolagus cuniculus ENSOCUG00000013731 I 0.762
RUNX3 Oryctolagus cuniculus ENSOCUG00000017751 I 0.762
RUNX1 Pteropus vampyrus ENSPVAG00000001606 I 0.762
RUNX3 Ochotona princeps ENSOPRG00000011273 I 0.762
RUNX3 Pan troglodytes ENSPTRG00000000351 I 0.762
ENSPANG00000007357 Papio anubis ENSPANG00000007357 I 0.762
ENSAMXG00000000881 Astyanax mexicanus ENSAMXG00000000881 I 0.762
RUNX1 Pan troglodytes ENSPTRG00000013883 I 0.762
ENSAMEG00000010102 Ailuropoda melanoleuca ENSAMEG00000010102 I 0.762
ENSNLEG00000004310 Nomascus leucogenys ENSNLEG00000004310 I 0.762
RUNX3 Tursiops truncatus ENSTTRG00000009396 I 0.762
ENSPPYG00000011394 Pongo abelii ENSPPYG00000011394 I 0.762
RUNX1 Oryzias latipes ENSORLG00000020699 I 0.762
ENSAMEG00000005325 Ailuropoda melanoleuca ENSAMEG00000005325 I 0.762
ENSPANG00000008140 Papio anubis ENSPANG00000008140 I 0.762
ENSSTOG00000022471 Ictidomys tridecemlineatus ENSSTOG00000022471 I 0.762
ENSFALG00000000025 Ficedula albicollis ENSFALG00000000025 I 0.762
Ogr17914 Ophisaurus gracilis Ogr17914 I 0.762
Runx1 Dipodomys ordii ENSDORG00000004347 I 0.762
RUNX1 Loxodonta africana ENSLAFG00000004290 I 0.762
Cmyd_10021516 Chelonia mydas Cmyd_10021516 I 0.762
ENSSHAG00000014782 Sarcophilus harrisii ENSSHAG00000014782 I 0.762
RUNX1 Gorilla gorilla ENSGGOG00000012862 I 0.762
RUNX3 Gorilla gorilla ENSGGOG00000004848 I 0.762
Pvit_04762 Pogona vitticeps Pvit_04762 I 0.762
RUNX3 Homo sapiens ENSG00000020633 D 0.762
RUNX1 Gasterosteus aculeatus ENSGACG00000015276 I 0.762
RUNX1 Gallus gallus ENSGALG00000016022 I 0.762
RUNX3 Felis catus ENSFCAG00000000680 I 0.762
ENSMEUG00000014419 Macropus eugenii ENSMEUG00000014419 I 0.762
ENSCSAG00000008703 Chlorocebus sabaeus ENSCSAG00000008703 I 0.762
ENSMPUG00000001340 Mustela putorius furo ENSMPUG00000001340 I 0.762
RUNX1 Monodelphis domestica ENSMODG00000021051 I 0.762
RUNX1 Homo sapiens ENSG00000159216 D 0.762
Runx1 Mus musculus ENSMUSG00000022952 D 0.762
RUNX1 Callithrix jacchus ENSCJAG00000002816 I 0.762
ENSCPOG00000000551 Cavia porcellus ENSCPOG00000000551 I 0.762
ENSSSCG00000012051 Sus scrofa ENSSSCG00000012051 I 0.762
ENSCSAG00000000947 Chlorocebus sabaeus ENSCSAG00000000947 I 0.762
RUNX1 Microcebus murinus ENSMICG00000011998 I 0.762
RUNX1 Macaca mulatta ENSMMUG00000001649 I 0.762
RUNX3 Macaca mulatta ENSMMUG00000002420 I 0.762
runx1.L Xenopus laevis XB-GENE-864949 I 0.762
Runx3 Mus musculus ENSMUSG00000070691 D 0.762
ENSLOCG00000010990 Lepisosteus oculatus ENSLOCG00000010990 I 0.754
ENSXMAG00000004396 Xiphophorus maculatus ENSXMAG00000004396 I 0.754
RUNX1 Dasypus novemcinctus ENSDNOG00000015041 I 0.754
runx2a Danio rerio ENSDARG00000040261 I 0.754
ENSOPRG00000000765 Ochotona princeps ENSOPRG00000000765 I 0.754
RUNX1 Tursiops truncatus ENSTTRG00000014160 I 0.754
ENSPFOG00000008944 Poecilia formosa ENSPFOG00000008944 I 0.754
ENSTSYG00000005097 Tarsius syrichta ENSTSYG00000005097 I 0.754
RUNX3 Callithrix jacchus ENSCJAG00000020815 I 0.754
ENSCPOG00000002684 Cavia porcellus ENSCPOG00000002684 I 0.754
runx2b Tetraodon nigroviridis ENSTNIG00000009685 I 0.746
ENSXMAG00000003400 Xiphophorus maculatus ENSXMAG00000003400 I 0.746
RUNX2 Tursiops truncatus ENSTTRG00000006943 I 0.746
runx2 Takifugu rubripes ENSTRUG00000003501 I 0.746
ENSONIG00000001025 Oreochromis niloticus ENSONIG00000001025 I 0.746
RUNX2 Monodelphis domestica ENSMODG00000018912 I 0.746
RUNX2 Macaca mulatta ENSMMUG00000019819 I 0.746
RUNX2 Cavia porcellus ENSCPOG00000005277 I 0.746
Runx2 Mus musculus ENSMUSG00000039153 D 0.746
RUNX2 Dasypus novemcinctus ENSDNOG00000034361 I 0.746
ENSLOCG00000015816 Lepisosteus oculatus ENSLOCG00000015816 I 0.746
ENSLACG00000011545 Latimeria chalumnae ENSLACG00000011545 I 0.746
RUNX2 Homo sapiens ENSG00000124813 D 0.746
RUNX2 Erinaceus europaeus ENSEEUG00000009243 I 0.746
RUNX2 Gorilla gorilla ENSGGOG00000012890 I 0.746
ENSCSAG00000012528 Chlorocebus sabaeus ENSCSAG00000012528 I 0.746
ENSGMOG00000010468 Gadus morhua ENSGMOG00000010468 I 0.746
RUNX2 Otolemur garnettii ENSOGAG00000003900 I 0.746
RUNX2 Bos taurus ENSBTAG00000004104 I 0.746
Runx2 Rattus norvegicus ENSRNOG00000020193 I 0.746
ENSPANG00000006186 Papio anubis ENSPANG00000006186 I 0.746
RUNX1 Procavia capensis ENSPCAG00000016747 I 0.746
ENSSHAG00000009950 Sarcophilus harrisii ENSSHAG00000009950 I 0.746
runx2 Oryzias latipes ENSORLG00000010169 I 0.746
RUNX2 Ochotona princeps ENSOPRG00000002943 I 0.746
RUNX2 Pan troglodytes ENSPTRG00000018228 I 0.746
ENSSTOG00000010163 Ictidomys tridecemlineatus ENSSTOG00000010163 I 0.746
ENSPPYG00000016664 Pongo abelii ENSPPYG00000016664 I 0.746
ENSPFOG00000016115 Poecilia formosa ENSPFOG00000016115 I 0.746
Pvit_01165 Pogona vitticeps Pvit_01165 I 0.738
RUNX2 Taeniopygia guttata ENSTGUG00000013249 I 0.738
runx2b Gasterosteus aculeatus ENSGACG00000012322 I 0.738
Myotis_brandtii_RUNX2_10026084 Myotis brandtii Myotis_brandtii_RUNX2_10026084 I 0.738
ENSOARG00000006421 Ovis aries ENSOARG00000006421 I 0.738
RUNX2 Anolis carolinensis ENSACAG00000013003 I 0.738
Cmyd_10020455 Chelonia mydas Cmyd_10020455 I 0.738
ENSAMXG00000017349 Astyanax mexicanus ENSAMXG00000017349 I 0.731
Alligator_sinensis_CCG001676.1 Alligator sinensis Alligator_sinensis_CCG001676.1 I 0.731
runx2b Danio rerio ENSDARG00000059233 I 0.731
MESCA007078 Megaselia scalaris MESCA007078 I 0.730
runx2.L Xenopus laevis XB-GENE-864817 I 0.723
RUNX3 Myotis lucifugus ENSMLUG00000003395 I 0.723
ENSTGUG00000004719 Taeniopygia guttata ENSTGUG00000004719 I 0.723
AMAM011616 Anopheles maculatus AMAM011616 I 0.720
Gfo_R011596 Geospiza fortis Gfo_R011596 I 0.719
RUNX2 Equus caballus ENSECAG00000020875 I 0.715
ACEP16400 Atta cephalotes ACEP16400 I 0.714
PPAI006591 Phlebotomus papatasi PPAI006591 I 0.708
TriadG25179 Trichoplax adhaerens TriadG25179 I 0.708
runx2 Xenopus tropicalis XB-GENE-482021 I 0.708
NEMVEDRAFT_v1g129231 Nematostella vectensis NEMVEDRAFT_v1g129231 I 0.708
ENSMPUG00000015804 Mustela putorius furo ENSMPUG00000015804 I 0.700
AALB007752 Anopheles albimanus AALB007752 I 0.700
XP_002165633.1 Hydra magnipapillata XP_002165633.1 I 0.700