Afo_R008955 (Aptenodytes forsteri)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 Afo_R008955 T319643_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RUNX3
M03464_2.00
Homo sapiens
HRACCGCAAACCRCAN

NTGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX3_1
1.000 1.000
RUNX3
M03465_2.00
Homo sapiens
WAACCRCARN

NYTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX3_2
1.000 1.000
RUNX3
M03466_2.00
Homo sapiens
HDACCRCADWAACCRCRN

NYGYGGTTWHTGYGGTHD
SELEX
Jolma et al.(2013)
RUNX3_3
1.000 1.000
RUNX3
M03467_2.00
Homo sapiens
HRACCRCAAH

DTTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX3_4
1.000 1.000
RUNX3
M02751_2.00
Homo sapiens
WACCRCAM

KTGYGGTW
SELEX
Jolma et al.(2010)
RUNX3_monomer
1.000 1.000
RUNX3
M05731_2.00
Homo sapiens
YWAACCGCAAAAACCGCARV

BYTGCGGTTTTTGCGGTTWR
SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX
1.000 1.000
RUNX3
M09369_2.00
Homo sapiens
HAACCACARN

NYTGTGGTTD
Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A
1.000 1.000
Runx3
M09374_2.00
Mus musculus
NHRACCACARVN

NBYTGTGGTYDN
Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A
1.000 1.000
RUNX3
M11252_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3_01
1.000 1.000
RUNX3
M11253_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3
1.000 1.000
RUNX3
M11254_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q4
1.000 1.000
RUNX3
M05732_2.00
Homo sapiens
HWAACCACRAAAACCACRARN

NYTYGTGGTTTTYGTGGTTWD
SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX
1.000 1.000
Runx2
M01307_2.00
Mus musculus
NHDACCRCAN

NTGYGGTHDN
PBM
Lambert et al.(2019)
pTH9764
0.988 0.988
RUNX2
M03468_2.00
Homo sapiens
HRACCGCAAACCRCRD

HYGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX2_1
0.988 0.988
RUNX2
M03469_2.00
Homo sapiens
HRACCRCADWWACCRCAD

HTGYGGTWWHTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX2_2
0.988 0.988
RUNX2
M03470_2.00
Homo sapiens
WAACCRCAR

YTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX2_3
0.988 0.988
RUNX2
M05733_2.00
Homo sapiens
NHRACCRCADWAACCRCAVN

NBTGYGGTTWHTGYGGTYDN
SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX
0.988 0.988
RUNX2
M09370_2.00
Homo sapiens
MMHAACCACAVVMH

DKBBTGTGGTTDKK
Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A
0.988 0.988
Runx2
M09373_2.00
Mus musculus
VWRACCACARVV

BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A
0.988 0.988
RUNX2
M09630_2.00
Homo sapiens
NHVACCACANNN

NNNTGTGGTBDN
Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889
0.988 0.988
RUNX2
M11255_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q3
0.988 0.988
RUNX2
M11256_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q6
0.988 0.988
RUNX2
M11257_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OSF2_Q6
0.988 0.988
RUNX2
M05734_2.00
Homo sapiens
NWAACCACRAAAACCACRRN

NYYGTGGTTTTYGTGGTTWN
SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX
0.988 0.988
Runx1
M08163_2.00
Mus musculus
HRRCCACARVN

NBYTGTGGYYD
ChIP-seq
Mathelier et al.(2014)
MA0002.2
0.940 0.940
RUNX1
M09371_2.00
Homo sapiens
NWAACCACARV

BYTGTGGTTWN
Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A
0.940 0.940
Runx1
M09372_2.00
Mus musculus
VWRACCACARVV

BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A
0.940 0.940
RUNX1
M09632_2.00
Homo sapiens
HAACCACADV

BHTGTGGTTD
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180
0.940 0.940
RUNX1
M09631_2.00
Homo sapiens
VCCACWTCCTBY

RVAGGAWGTGGB
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954
0.940 0.940
Runx1
M09633_2.00
Mus musculus
NWAACCACAR

YTGTGGTTWN
Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178
0.940 0.940
RUNX1
M11258_2.00
Homo sapiens
ACCRCA

TGYGGT
Transfac
Matys et al.(2006)
V$AML1_01
0.940 0.940
RUNX1
M11259_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4_01
0.940 0.940
RUNX1
M11260_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4_02
0.940 0.940
RUNX1
M11261_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4
0.940 0.940
RUNX1
M11262_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q5
0.940 0.940
RUNX1
M11263_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q6
0.940 0.940
lz
M03964_2.00
Drosophila melanogaster
HRACCGCAAHM

KDTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_1
0.762 0.762
lz
M03965_2.00
Drosophila melanogaster
HVACCRCARWAACCRCAV

BTGYGGTTWYTGYGGTBD
SELEX
Nitta et al.(2015)
lz_2
0.762 0.762
lz
M03966_2.00
Drosophila melanogaster
WRACCRCAWTAACCRCAA

TTGYGGTTAWTGYGGTYW
SELEX
Nitta et al.(2015)
lz_3
0.762 0.762
lz
M03967_2.00
Drosophila melanogaster
HRACCGCAAAACCRCAR

YTGYGGTTTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_4
0.762 0.762
run
M06444_2.00
Drosophila melanogaster
WAACCGCAR

YTGCGGTTW
B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300
0.726 0.726
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R008955 Runt 1 84

Links

Other Runt family TFs
Other Aptenodytes forsteri TFs

226 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AB07947.1 Alternaria brassicicola AB07947.1 I 0.000
ARB_00880 Arthroderma benhamiae ARB_00880 I 0.000
MCYG_01946 Arthroderma otae MCYG_01946 I 0.000
AGOS_AAR050C Ashbya gossypii AGOS_AAR050C I 0.000
M437DRAFT_81025 Aureobasidium melanogenum M437DRAFT_81025 I 0.000
M438DRAFT_10900 Aureobasidium pullulans M438DRAFT_10900 I 0.000
AUEXF2481DRAFT_3444 Aureobasidium subglaciale AUEXF2481DRAFT_3444 I 0.000
BAUCODRAFT_451965 Baudoinia compniacensis BAUCODRAFT_451965 I 0.000
COCC4DRAFT_190022 Bipolaris maydis COCC4DRAFT_190022 I 0.000
COCMIDRAFT_85791 Bipolaris oryzae COCMIDRAFT_85791 I 0.000
COCSADRAFT_82560 Bipolaris sorokiniana COCSADRAFT_82560 I 0.000
COCVIDRAFT_108808 Bipolaris victoriae COCVIDRAFT_108808 I 0.000
COCCADRAFT_104200 Bipolaris zeicola COCCADRAFT_104200 I 0.000
BDDG_09302 Blastomyces dermatitidis BDDG_09302 I 0.000
CaO19.12316 Candida albicans CaO19.12316 I 0.000
CaO19.4853 Candida albicans CaO19.4853 I 0.000
CD36_09290 Candida dubliniensis CD36_09290 I 0.000
CAGL0J03608g Candida glabrata CAGL0J03608g I 0.000
PGUG_03609 Candida guilliermondii PGUG_03609 I 0.000
G210_5562 Candida maltosa G210_5562 N 0.000
CORT_0A03490 Candida orthopsilosis CORT_0A03490 I 0.000
CPAG_02650 Candida parapsilosis CPAG_02650 I 0.000
CANTEDRAFT_132311 Candida tenuis CANTEDRAFT_132311 I 0.000
CTRG_03373 Candida tropicalis CTRG_03373 I 0.000
CHGG_03283 Chaetomium globosum CHGG_03283 I 0.000
CTHT_0023230 Chaetomium thermophilum CTHT_0023230 I 0.000
CIMG_06369 Coccidioides immitis CIMG_06369 I 0.000
CPC735_028750 Coccidioides posadasii CPC735_028750 I 0.000
estExt_fgenesh1_pg.C_70047 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_70047 I 0.000
CGGC5_1850 Colletotrichum gloeosporioides CGGC5_1850 I 0.000
GLRG_00119 Colletotrichum graminicola GLRG_00119 I 0.000
CH063_10052 Colletotrichum higginsianum CH063_10052 I 0.000
Cob_10099 Colletotrichum orbiculare Cob_10099 I 0.000
CSUB01_05644 Colletotrichum sublineola CSUB01_05644 I 0.000
W97_05244 Coniosporium apollinis W97_05244 I 0.000
DEHA2F11308g Debaryomyces hansenii DEHA2F11308g I 0.000
Ecym_2489 Eremothecium cymbalariae Ecym_2489 I 0.000
UCREL1_4498 Eutypa lata UCREL1_4498 I 0.000
A1O9_03221 Exophiala aquamarina A1O9_03221 I 0.000
NechaG104145 Fusarium solani NechaG104145 I 0.000
GGTG_08235 Gaeumannomyces graminis GGTG_08235 I 0.000
CMQ_2924 Grosmannia clavigera CMQ_2924 I 0.000
HCBG_02171 Histoplasma capsulatum HCBG_02171 I 0.000
KNAG_0I02890 Kazachstania naganishii KNAG_0I02890 I 0.000
Kwal_6278 Kluyveromyces waltii Kwal_6278 I 0.000
KUCA_T00001016001 Kuraishia capsulata KUCA_T00001016001 I 0.000
SAKL0A01496g Lachancea kluyveri SAKL0A01496g I 0.000
LALA0_S02e07250g Lachancea lanzarotensis LALA0_S02e07250g I 0.000
KLTH0A06534g Lachancea thermotolerans KLTH0A06534g I 0.000
LELG_00412 Lodderomyces elongisporus LELG_00412 I 0.000
MPH_06970 Macrophomina phaseolina MPH_06970 I 0.000
MGG_06422 Magnaporthe oryzae MGG_06422 I 0.000
MAPG_08028 Magnaporthe poae MAPG_08028 I 0.000
PGUG_03609 Meyerozyma guilliermondii PGUG_03609 I 0.000
MCYG_01946 Microsporum canis MCYG_01946 I 0.000
MGYG_04125 Microsporum gypseum MGYG_04125 I 0.000
GNLVRS01_PISO0L10197g Millerozyma farinosa GNLVRS01_PISO0L10197g N 0.000
GNLVRS01_PISO0K10196g Millerozyma farinosa GNLVRS01_PISO0K10196g N 0.000
gw1.6.897.1 Mucor circinelloides gw1.6.897.1 I 0.000
MYCTH_2305050 Myceliophthora thermophila MYCTH_2305050 I 0.000
e_gw1.15.387.1 Mycosphaerella fijiensis e_gw1.15.387.1 I 0.000
estExt_fgenesh1_pg.C_chr_80261 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_80261 I 0.000
NDAI_0I00410 Naumovozyma dairenensis NDAI_0I00410 I 0.000
estExt_fgenesh1_pm.C_sca_3_chr4_2_00404 Nectria haematococca estExt_fgenesh1_pm.C_sca_3_chr4_2_00404 I 0.000
UCRNP2_7609 Neofusicoccum parvum UCRNP2_7609 I 0.000
NCU06173 Neurospora crassa NCU06173 D 0.000
fgenesh2_pg.C_scaffold_5000694 Neurospora discreta fgenesh2_pg.C_scaffold_5000694 I 0.000
NEUTE1DRAFT_81248 Neurospora tetrasperma NEUTE1DRAFT_81248 I 0.000
HPODL_02749 Ogataea parapolymorpha HPODL_02749 I 0.000
F503_02986 Ophiostoma piceae uamh F503_02986 I 0.000
PAAG_07388 Paracoccidioides sp lutzii PAAG_07388 I 0.000
PMAA_086430 Penicillium marneffei PMAA_086430 I 0.000
SNOG_09317 Phaeosphaeria nodorum SNOG_09317 I 0.000
estExt_fgeneshPB_pg.C_280113 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_280113 I 0.000
estExt_fgeneshPB_pg.C_260036 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_260036 I 0.000
PredSwiss_CON281.1 Pneumocystis carinii PredSwiss_CON281.1 I 0.000
PredSwiss_ASS2010_3214.2 Pneumocystis carinii PredSwiss_ASS2010_3214.2 I 0.000
PredSwiss_EST794.1 Pneumocystis carinii PredSwiss_EST794.1 I 0.000
PNEG_00623 Pneumocystis murina PNEG_00623 I 0.000
PODANS_7_8160 Podospora anserina PODANS_7_8160 I 0.000
MYCFIDRAFT_115603 Pseudocercospora fijiensis MYCFIDRAFT_115603 I 0.000
PTT_16256 Pyrenophora teres PTT_16256 I 0.000
PTRG_01176 Pyrenophora triticirepentis PTRG_01176 I 0.000
RO3G_13161 Rhizopus oryzae RO3G_13161 I 0.000
RO3G_04419 Rhizopus oryzae RO3G_04419 I 0.000
2876_YCR065W Saccharomyces bayanus 2876_YCR065W I 0.000
HCM1 Saccharomyces cerevisiae YCR065W D 0.000
1820_Multiple Saccharomyces mikatae 1820_Multiple I 0.000
2649_YCR065W Saccharomyces paradoxus 2649_YCR065W I 0.000
AACERI_AaceriAAR050C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAAR050C I 0.000
SCUD_0000143501 Schistosoma curassoni SCUD_0000143501 I 0.000
SJAG_03143 Schizosaccharomyces japonicus SJAG_03143 I 0.000
SETTUDRAFT_127754 Setosphaeria turcica SETTUDRAFT_127754 I 0.000
SMAC_05348 Sordaria macrospora SMAC_05348 I 0.000
SPAPADRAFT_68220 Spathaspora passalidarum SPAPADRAFT_68220 N 0.000
SEPMUDRAFT_149889 Sphaerulina musiva SEPMUDRAFT_149889 I 0.000
SNOG_09317 Stagonospora nodorum SNOG_09317 I 0.000
PMAA_086430 Talaromyces marneffei PMAA_086430 I 0.000
TSTA_121740 Talaromyces stipitatus TSTA_121740 I 0.000
TBLA_0I02350 Tetrapisispora blattae TBLA_0I02350 I 0.000
THITE_2118774 Thielavia terrestris THITE_2118774 I 0.000
TDEL_0A07460 Torulaspora delbrueckii TDEL_0A07460 I 0.000
TRIATDRAFT_82022 Trichoderma atroviride TRIATDRAFT_82022 I 0.000
TRIREDRAFT_21211 Trichoderma reesei TRIREDRAFT_21211 I 0.000
TRIVIDRAFT_30889 Trichoderma virens TRIVIDRAFT_30889 I 0.000
TEQG_03180 Trichophyton equinum TEQG_03180 I 0.000
H101_00911 Trichophyton interdigitale H101_00911 I 0.000
H102_04682 Trichophyton rubrum H102_04682 I 0.000
H105_04703 Trichophyton soudanense H105_04703 I 0.000
TESG_00453 Trichophyton tonsurans TESG_00453 I 0.000
TRV_07921 Trichophyton verrucosum TRV_07921 I 0.000
GSTUM_00006159001 Tuber melanosporum GSTUM_00006159001 I 0.000
UREG_04032 Uncinocarpus reesii UREG_04032 I 0.000
Kpol_1028p47 Vanderwaltozyma polyspora Kpol_1028p47 I 0.000
PV09_00091 Verruconis gallopava PV09_00091 I 0.000
ZBAI_09018 Zygosaccharomyces bailii ZBAI_09018 I 0.000
ZBAI_02769 Zygosaccharomyces bailii ZBAI_02769 I 0.000
Mycgr3G110431 Zymoseptoria tritici Mycgr3G110431 I 0.000