Alligator_sinensis_CCG010991.1 (Alligator sinensis)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 Alligator_sinensis_CCG010991.1 T319646_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.987 0.987
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.987 0.987
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.987 0.987
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.987 0.987
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.987 0.987
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.987 0.987
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.987 0.987
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.987 0.987
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.987 0.987
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.987 0.987
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.987 0.987
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.987 0.987
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.973 0.973
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.973 0.973
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.973 0.973
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.973 0.973
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.973 0.973
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.973 0.973
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.973 0.973
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.973 0.973
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.973 0.973
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.973 0.973
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.973 0.973
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.973 0.973
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.947 0.947
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.947 0.947
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.947 0.947
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.947 0.947
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.947 0.947
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.947 0.947
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.947 0.947
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.947 0.947
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.947 0.947
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.947 0.947
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.947 0.947
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.947 0.947
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.773 0.773
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.773 0.773
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.773 0.773
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.773 0.773
run
M06444_2.00 		Drosophila melanogaster
WAACCGCAR
YTGCGGTTW		 B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300 		0.733 0.733
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG010991.1 Runt 1 75

Links

Other Runt family TFs
Other Alligator sinensis TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSNLEG00000009021 Nomascus leucogenys ENSNLEG00000009021 I 0.987
ENSMPUG00000015804 Mustela putorius furo ENSMPUG00000015804 I 0.987
RUNX3 Myotis lucifugus ENSMLUG00000003395 I 0.987
Aan_R005895 Calypte anna Aan_R005895 I 0.987
RUNX3 Bos taurus ENSBTAG00000019800 I 0.987
RUNX3 Callithrix jacchus ENSCJAG00000020815 I 0.987
ENSSHAG00000012559 Sarcophilus harrisii ENSSHAG00000012559 I 0.987
ENSSSCG00000025551 Sus scrofa ENSSSCG00000025551 I 0.982
RUNX2 Macaca mulatta ENSMMUG00000019819 I 0.973
RUNX2 Equus caballus ENSECAG00000020875 I 0.973
RUNX2 Erinaceus europaeus ENSEEUG00000009243 I 0.973
RUNX2 Dasypus novemcinctus ENSDNOG00000034361 I 0.973
RUNX2 Monodelphis domestica ENSMODG00000018912 I 0.973
ENSSHAG00000009950 Sarcophilus harrisii ENSSHAG00000009950 I 0.973
runx2a Danio rerio ENSDARG00000040261 I 0.973
Runx2 Mus musculus ENSMUSG00000039153 D 0.973
RUNX2 Felis catus ENSFCAG00000022480 I 0.973
RUNX2 Loxodonta africana ENSLAFG00000005054 I 0.973
RUNX2 Gorilla gorilla ENSGGOG00000012890 I 0.973
ENSLACG00000011545 Latimeria chalumnae ENSLACG00000011545 I 0.973
ENSSTOG00000010163 Ictidomys tridecemlineatus ENSSTOG00000010163 I 0.973
ENSLOCG00000015816 Lepisosteus oculatus ENSLOCG00000015816 I 0.973
RUNX2 Myotis lucifugus ENSMLUG00000000514 I 0.973
RUNX2 Homo sapiens ENSG00000124813 D 0.973
RUNX2 Tupaia belangeri ENSTBEG00000000948 I 0.973
ENSCSAG00000012528 Chlorocebus sabaeus ENSCSAG00000012528 I 0.973
RUNX2 Ochotona princeps ENSOPRG00000002943 I 0.973
ENSP00000352514 Macaca fascicularis ENSP00000352514 I 0.973
RUNX2 Cavia porcellus ENSCPOG00000005277 I 0.973
ENSPPYG00000016664 Pongo abelii ENSPPYG00000016664 I 0.973
ENSPPYG00000001714 Pongo abelii ENSPPYG00000001714 I 0.973
ENSAMEG00000009223 Ailuropoda melanoleuca ENSAMEG00000009223 I 0.973
ENSPANG00000006186 Papio anubis ENSPANG00000006186 I 0.973
RUNX2 Bos taurus ENSBTAG00000004104 I 0.973
RUNX2 Otolemur garnettii ENSOGAG00000003900 I 0.973
RUNX2 Tursiops truncatus ENSTTRG00000006943 I 0.973
Runx2 Rattus norvegicus ENSRNOG00000020193 I 0.973
RUNX2 Ornithorhynchus anatinus ENSOANG00000008265 I 0.973
ENSBTAP00000006227-D1 Bos grunniens ENSBTAP00000006227-D1 I 0.973
RUNX2 Pan troglodytes ENSPTRG00000018228 I 0.973
ENSOCUG00000011739 Oryctolagus cuniculus ENSOCUG00000011739 I 0.973
RUNX2 Taeniopygia guttata ENSTGUG00000013249 I 0.960
ENSPFOG00000003997 Poecilia formosa ENSPFOG00000003997 I 0.960
ENSONIG00000008210 Oreochromis niloticus ENSONIG00000008210 I 0.960
runx3 Tetraodon nigroviridis ENSTNIG00000016911 I 0.960
runx3 Oryzias latipes ENSORLG00000017515 I 0.960
runx3 Takifugu rubripes ENSTRUG00000001517 I 0.960
ENSLOCG00000002744 Lepisosteus oculatus ENSLOCG00000002744 I 0.960
runx2b Gasterosteus aculeatus ENSGACG00000012322 I 0.960
ENSAMXG00000004048 Astyanax mexicanus ENSAMXG00000004048 I 0.960
runx2.L Xenopus laevis XB-GENE-864817 I 0.960
Gfo_R000714 Geospiza fortis Gfo_R000714 I 0.960
Pvit_01165 Pogona vitticeps Pvit_01165 I 0.960
runx2b Danio rerio ENSDARG00000059233 I 0.960
RUNX2 Anolis carolinensis ENSACAG00000013003 I 0.960
ENSXMAG00000018835 Xiphophorus maculatus ENSXMAG00000018835 I 0.960
ENSFALG00000001493 Ficedula albicollis ENSFALG00000001493 I 0.960
Afo_R012718 Aptenodytes forsteri Afo_R012718 I 0.960
ENSGALG00000026484 Gallus gallus ENSGALG00000026484 I 0.960
runx3 Gasterosteus aculeatus ENSGACG00000007301 I 0.960
ENSAMXG00000017349 Astyanax mexicanus ENSAMXG00000017349 I 0.960
runx3 Danio rerio ENSDARG00000052826 I 0.960
Cmyd_10020455 Chelonia mydas Cmyd_10020455 I 0.960
ENSP00000409227-D1 Bos grunniens ENSP00000409227-D1 I 0.947
RUNX1 Pteropus vampyrus ENSPVAG00000001606 I 0.947
ENSSHAG00000014782 Sarcophilus harrisii ENSSHAG00000014782 I 0.947
XP_002939387 Xenopus tropicalis XP_002939387 I 0.947
XP_002939386 Xenopus tropicalis XP_002939386 I 0.947
ENSOPRG00000000765 Ochotona princeps ENSOPRG00000000765 I 0.947
runx2 Xenopus tropicalis XB-GENE-482021 I 0.947
Gfo_R013848 Geospiza fortis Gfo_R013848 I 0.947
ENSOARG00000013599 Ovis aries ENSOARG00000013599 I 0.947
ENSCPOG00000002684 Cavia porcellus ENSCPOG00000002684 I 0.947
RUNX1 Monodelphis domestica ENSMODG00000021051 I 0.947
RUNX1 Macaca mulatta ENSMMUG00000001649 I 0.947
RUNX1 Callithrix jacchus ENSCJAG00000002816 I 0.947
ENSP00000300305 Macaca fascicularis ENSP00000300305 I 0.947
ENSOANG00000031074 Ornithorhynchus anatinus ENSOANG00000031074 I 0.947
RUNX1 Bos taurus ENSBTAG00000004742 I 0.947
ENSFCAG00000029032 Felis catus ENSFCAG00000029032 I 0.938
runx1.L Xenopus laevis XB-GENE-864949 I 0.933
RUNX1 Equus caballus ENSECAG00000003462 I 0.933
ENSCAFG00000031052 Canis familiaris ENSCAFG00000031052 I 0.933
runx2 Takifugu rubripes ENSTRUG00000003501 I 0.933
ENSMPUG00000001340 Mustela putorius furo ENSMPUG00000001340 I 0.933
ENSAMXG00000000881 Astyanax mexicanus ENSAMXG00000000881 I 0.933
RUNX1 Dasypus novemcinctus ENSDNOG00000015041 I 0.933
CABZ01102124.1 Danio rerio ENSDARG00000103592 I 0.921
ENSTNIG00000018690 Tetraodon nigroviridis ENSTNIG00000018690 I 0.920
ENSMGAG00000014534 Meleagris gallopavo ENSMGAG00000014534 I 0.920
ENSAMXG00000012244 Astyanax mexicanus ENSAMXG00000012244 I 0.920
Runx1 Mus musculus ENSMUSG00000022952 D 0.920
RUNX1 Homo sapiens ENSG00000159216 D 0.920
ENSPSIG00000017547 Pelodiscus sinensis ENSPSIG00000017547 I 0.920
RUNX1 Gasterosteus aculeatus ENSGACG00000015276 I 0.920
ENSLACG00000013776 Latimeria chalumnae ENSLACG00000013776 I 0.907
ENSTSYG00000005097 Tarsius syrichta ENSTSYG00000005097 I 0.907
RUNX1 Tursiops truncatus ENSTTRG00000014160 I 0.907
runx1 Takifugu rubripes ENSTRUG00000012611 I 0.907
ENSAPLG00000007026 Anas platyrhynchos ENSAPLG00000007026 I 0.895
Afo_R008955 Aptenodytes forsteri Afo_R008955 I 0.881
ENSLACG00000015930 Latimeria chalumnae ENSLACG00000015930 I 0.880
Sakowv30005496m.g Saccoglossus kowalevskii Sakowv30005496m.g I 0.867
ENSCING00000002253 Ciona intestinalis ENSCING00000002253 I 0.853
YQE_12218 Dendroctonus ponderosae YQE_12218 I 0.827
tetur01g02340 Tetranychus urticae tetur01g02340 I 0.827
RPRC005391 Rhodnius prolixus RPRC005391 I 0.813
RUNX3 Anolis carolinensis ENSACAG00000017855 I 0.804
ML03045a Mnemiopsis leidyi ML03045a I 0.800
AATE002063 Anopheles atroparvus AATE002063 I 0.800
Cflo_03911--XP_394014.2_APIME Camponotus floridanus Cflo_03911--XP_394014.2_APIME I 0.800
ASTEI07771 Anopheles stephensi ASTEI07771 I 0.800
NV11000 Nasonia vitripennis NV11000 I 0.800
AAEL006160 Aedes aegypti AAEL006160 I 0.800
Tal_R011874 Tyto alba Tal_R011874 I 0.791
RUNX2 Meleagris gallopavo ENSMGAG00000014267 I 0.791
ENSAPLG00000011653 Anas platyrhynchos ENSAPLG00000011653 I 0.791
Brh_R000794 Buceros rhinoceros Brh_R000794 I 0.791
Brh_R001637 Buceros rhinoceros Brh_R001637 I 0.789
Afo_R004888 Aptenodytes forsteri Afo_R004888 I 0.789
Aan_R007315 Calypte anna Aan_R007315 I 0.789
Hsal_12319--XP_394016.2_APIME Harpegnathos saltator Hsal_12319--XP_394016.2_APIME I 0.787
SINV13317 Solenopsis invicta SINV13317 I 0.787
GL16499 Drosophila persimilis FBgn0154103 I 0.787
GA22609 Drosophila pseudoobscura FBgn0244012 I 0.787
Cflo_03909--XP_394016.2_APIME Camponotus floridanus Cflo_03909--XP_394016.2_APIME I 0.787
LLOJ002717 Lutzomyia longipalpis LLOJ002717 I 0.787
ENSPSIG00000014293 Pelodiscus sinensis ENSPSIG00000014293 I 0.783
BGIBMGA008906 Bombyx mori BGIBMGA008906 I 0.773
TC006536 Tribolium castaneum TC006536 I 0.773
GG18309 Drosophila erecta FBgn0110525 I 0.773
DAPPUDRAFT_290557 Daphnia pulex DAPPUDRAFT_290557 I 0.773
TC006542 Tribolium castaneum TC006542 I 0.773
lz Drosophila melanogaster FBgn0002576 D 0.773
MCINX000302 Melitaea cinxia MCINX000302 I 0.773
GM22478 Drosophila sechellia FBgn0177348 I 0.773
GE17788 Drosophila yakuba FBgn0235232 I 0.773
GD16951 Drosophila simulans FBgn0188530 I 0.773
ACYPI007541 Acyrthosiphon pisum ACYPI007541 I 0.773
GM23044 Drosophila sechellia FBgn0177912 I 0.760
GA13742 Drosophila pseudoobscura FBgn0073778 I 0.760
GL15800 Drosophila persimilis FBgn0153404 I 0.760
ACEP16410 Atta cephalotes ACEP16410 I 0.760
GG19691 Drosophila erecta FBgn0111893 I 0.760
GH17737 Drosophila grimshawi FBgn0125207 I 0.760
PPAI010986 Phlebotomus papatasi PPAI010986 I 0.760
RunxB Drosophila melanogaster FBgn0259162 I 0.760
BGLB004758 Biomphalaria glabrata BGLB004758 I 0.760
GK19810 Drosophila willistoni FBgn0221808 I 0.760
KGM_21067 Danaus plexippus KGM_21067 I 0.760
GE17890 Drosophila yakuba FBgn0235328 I 0.760
GF15967 Drosophila ananassae FBgn0092990 I 0.760
GJ19245 Drosophila virilis FBgn0206390 I 0.760
Hsal_04635--XP_394013.3_APIME Harpegnathos saltator Hsal_04635--XP_394013.3_APIME I 0.760
GD17495 Drosophila simulans FBgn0189047 I 0.760
ACYPI001442 Acyrthosiphon pisum ACYPI001442 I 0.760
AGAP001094 Anopheles gambiae AGAP001094 I 0.747
ACOM031089 Anopheles coluzzii ACOM031089 I 0.747
AMEM004753 Anopheles merus AMEM004753 I 0.747
AQUA009970 Anopheles quadriannulatus AQUA009970 I 0.747
MDOA013149 Musca domestica MDOA013149 I 0.747
AMEC007551 Anopheles melas AMEC007551 I 0.747
NV10998 Nasonia vitripennis NV10998 I 0.747
AARA011472 Anopheles arabiensis AARA011472 I 0.747
PHUM333340 Pediculus humanus PHUM333340 I 0.747
ACEP16400 Atta cephalotes ACEP16400 I 0.738
ENSTNIG00000009855 Tetraodon nigroviridis ENSTNIG00000009855 I 0.733
run Drosophila simulans FBgn0016352 I 0.733
ENSXMAG00000006715 Xiphophorus maculatus ENSXMAG00000006715 I 0.733
run Drosophila erecta FBgn0085118 I 0.733
GF15970 Drosophila ananassae FBgn0092993 I 0.733
GI15491 Drosophila mojavensis FBgn0138240 I 0.733
GM23050 Drosophila sechellia FBgn0177918 I 0.733
GK19815 Drosophila willistoni FBgn0221813 I 0.733
GL15806 Drosophila persimilis FBgn0153410 I 0.733
GH17740 Drosophila grimshawi FBgn0125210 I 0.733
run Drosophila melanogaster FBgn0003300 D 0.733
run Drosophila yakuba FBgn0084618 I 0.733
run Drosophila pseudoobscura FBgn0013862 I 0.733
ENSGACG00000011721 Gasterosteus aculeatus ENSGACG00000011721 I 0.733
run Drosophila virilis FBgn0013920 I 0.733
LCUP002656 Lucilia cuprina LCUP002656 I 0.714
MESCA007079 Megaselia scalaris MESCA007079 I 0.711
PPAI006591 Phlebotomus papatasi PPAI006591 I 0.708
EmuJ_000490800 Echinococcus multilocularis EmuJ_000490800 I 0.707
PHUM333310 Pediculus humanus PHUM333310 I 0.707
ENSSTOG00000020082 Ictidomys tridecemlineatus ENSSTOG00000020082 I 0.707
ENSP00000382800 Macaca fascicularis ENSP00000382800 I 0.705
MESCA007078 Megaselia scalaris MESCA007078 I 0.703
AALB007752 Anopheles albimanus AALB007752 I 0.700