CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cflo_03910--XP_001121886.1_APIME
(
Camponotus floridanus
)
Runt
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00853 (Runt)
IPR013524
Cflo_03910--XP_001121886.1_APIME
T319650_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
run
M06444_2.00
Drosophila melanogaster
WAACCGCAR
YTGCGGTTW
B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300
0.769
0.769
lz
M03964_2.00
Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_1
0.708
0.708
lz
M03965_2.00
Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD
SELEX
Nitta et al.(2015)
lz_2
0.708
0.708
lz
M03966_2.00
Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW
SELEX
Nitta et al.(2015)
lz_3
0.708
0.708
lz
M03967_2.00
Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_4
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cflo_03910--XP_001121886.1_APIME
Runt
16
145
IYETLRSCHGDLVQTGSPTILCSTLPCHWRSNKSLPVAFKVIALDEVSDGTLVTIRAGNDENFFGELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFSLTIQISSVPHQVATYSKAIKVTVDGPREPRSKT
Links
Other
Runt
family TFs
Other
Camponotus floridanus
TFs
162 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy