|
ENSBTAP00000006227-D1
(Bos grunniens)
Runt
|
TF Information |
Pfam ID |
Interpro ID |
Gene ID |
CIS-BP ID |
Sequence source |
PF00853 (Runt) |
IPR013524 |
ENSBTAP00000006227-D1 |
T319656_2.00 |
GigaDB (2015-Oct-22) |
NCBI Gene Info:This gene encodes a tumor suppressor protein containing transcriptional activation, DNA binding, and oligomerization domains. The encoded protein responds to diverse cellular stresses to regulate expression of target genes, thereby inducing cell cycle arrest, apoptosis, senescence, DNA repair, or changes in metabolism. Mutations in this gene are associated with a variety of human cancers, including hereditary cancers such as Li-Fraumeni syndrome. Alternative splicing of this gene and the use of alternate promoters result in multiple transcript variants and isoforms. Additional isoforms have also been shown to result from the use of alternate translation initiation codons from identical transcript variants (PMIDs: 12032546, 20937277). [provided by RefSeq, Dec 2016] |
Directly determined binding motifs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
No direct experiments |
|
|
|
|
|
Motifs from related TFs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
Runx2
M01307_2.00 |
Mus musculus |
NHDACCRCAN |
NTGYGGTHDN |
PBM
Lambert et al.(2019)
pTH9764
|
1.000
|
1.000
|
RUNX2
M03468_2.00 |
Homo sapiens |
HRACCGCAAACCRCRD |
HYGYGGTTTGCGGTYD |
SELEX
Jolma et al.(2013)
RUNX2_1
|
1.000
|
1.000
|
RUNX2
M03469_2.00 |
Homo sapiens |
HRACCRCADWWACCRCAD |
HTGYGGTWWHTGYGGTYD |
SELEX
Jolma et al.(2013)
RUNX2_2
|
1.000
|
1.000
|
RUNX2
M03470_2.00 |
Homo sapiens |
WAACCRCAR |
YTGYGGTTW |
SELEX
Jolma et al.(2013)
RUNX2_3
|
1.000
|
1.000
|
RUNX2
M05733_2.00 |
Homo sapiens |
NHRACCRCADWAACCRCAVN |
NBTGYGGTTWHTGYGGTYDN |
SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX
|
1.000
|
1.000
|
RUNX2
M09370_2.00 |
Homo sapiens |
MMHAACCACAVVMH |
DKBBTGTGGTTDKK |
Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A
|
1.000
|
1.000
|
Runx2
M09373_2.00 |
Mus musculus |
VWRACCACARVV |
BBYTGTGGTYWB |
Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A
|
1.000
|
1.000
|
RUNX2
M09630_2.00 |
Homo sapiens |
NHVACCACANNN |
NNNTGTGGTBDN |
Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889
|
1.000
|
1.000
|
RUNX2
M11255_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$AML3_Q3
|
1.000
|
1.000
|
RUNX2
M11256_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$AML3_Q6
|
1.000
|
1.000
|
RUNX2
M11257_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$OSF2_Q6
|
1.000
|
1.000
|
RUNX2
M05734_2.00 |
Homo sapiens |
NWAACCACRAAAACCACRRN |
NYYGTGGTTTTYGTGGTTWN |
SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX
|
1.000
|
1.000
|
RUNX3
M03464_2.00 |
Homo sapiens |
HRACCGCAAACCRCAN |
NTGYGGTTTGCGGTYD |
SELEX
Jolma et al.(2013)
RUNX3_1
|
0.978
|
0.978
|
RUNX3
M03465_2.00 |
Homo sapiens |
WAACCRCARN |
NYTGYGGTTW |
SELEX
Jolma et al.(2013)
RUNX3_2
|
0.978
|
0.978
|
RUNX3
M03466_2.00 |
Homo sapiens |
HDACCRCADWAACCRCRN |
NYGYGGTTWHTGYGGTHD |
SELEX
Jolma et al.(2013)
RUNX3_3
|
0.978
|
0.978
|
RUNX3
M03467_2.00 |
Homo sapiens |
HRACCRCAAH |
DTTGYGGTYD |
SELEX
Jolma et al.(2013)
RUNX3_4
|
0.978
|
0.978
|
RUNX3
M02751_2.00 |
Homo sapiens |
WACCRCAM |
KTGYGGTW |
SELEX
Jolma et al.(2010)
RUNX3_monomer
|
0.978
|
0.978
|
RUNX3
M05731_2.00 |
Homo sapiens |
YWAACCGCAAAAACCGCARV |
BYTGCGGTTTTTGCGGTTWR |
SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX
|
0.978
|
0.978
|
RUNX3
M09369_2.00 |
Homo sapiens |
HAACCACARN |
NYTGTGGTTD |
Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A
|
0.978
|
0.978
|
Runx3
M09374_2.00 |
Mus musculus |
NHRACCACARVN |
NBYTGTGGTYDN |
Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A
|
0.978
|
0.978
|
RUNX3
M11252_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$AML2_Q3_01
|
0.978
|
0.978
|
RUNX3
M11253_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$AML2_Q3
|
0.978
|
0.978
|
RUNX3
M11254_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$AML2_Q4
|
0.978
|
0.978
|
RUNX3
M05732_2.00 |
Homo sapiens |
HWAACCACRAAAACCACRARN |
NYTYGTGGTTTTYGTGGTTWD |
SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX
|
0.978
|
0.978
|
Runx1
M08163_2.00 |
Mus musculus |
HRRCCACARVN |
NBYTGTGGYYD |
ChIP-seq
Mathelier et al.(2014)
MA0002.2
|
0.944
|
0.944
|
RUNX1
M09371_2.00 |
Homo sapiens |
NWAACCACARV |
BYTGTGGTTWN |
Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A
|
0.944
|
0.944
|
Runx1
M09372_2.00 |
Mus musculus |
VWRACCACARVV |
BBYTGTGGTYWB |
Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A
|
0.944
|
0.944
|
RUNX1
M09632_2.00 |
Homo sapiens |
HAACCACADV |
BHTGTGGTTD |
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180
|
0.944
|
0.944
|
RUNX1
M09631_2.00 |
Homo sapiens |
VCCACWTCCTBY |
RVAGGAWGTGGB |
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954
|
0.944
|
0.944
|
Runx1
M09633_2.00 |
Mus musculus |
NWAACCACAR |
YTGTGGTTWN |
Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178
|
0.944
|
0.944
|
RUNX1
M11258_2.00 |
Homo sapiens |
ACCRCA |
TGYGGT |
Transfac
Matys et al.(2006)
V$AML1_01
|
0.944
|
0.944
|
RUNX1
M11259_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$AML1_Q4_01
|
0.944
|
0.944
|
RUNX1
M11260_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$AML1_Q4_02
|
0.944
|
0.944
|
RUNX1
M11261_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$AML1_Q4
|
0.944
|
0.944
|
RUNX1
M11262_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$AML1_Q5
|
0.944
|
0.944
|
RUNX1
M11263_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$AML1_Q6
|
0.944
|
0.944
|
lz
M03964_2.00 |
Drosophila melanogaster |
HRACCGCAAHM |
KDTTGCGGTYD |
SELEX
Nitta et al.(2015)
lz_1
|
0.778
|
0.778
|
lz
M03965_2.00 |
Drosophila melanogaster |
HVACCRCARWAACCRCAV |
BTGYGGTTWYTGYGGTBD |
SELEX
Nitta et al.(2015)
lz_2
|
0.778
|
0.778
|
lz
M03966_2.00 |
Drosophila melanogaster |
WRACCRCAWTAACCRCAA |
TTGYGGTTAWTGYGGTYW |
SELEX
Nitta et al.(2015)
lz_3
|
0.778
|
0.778
|
lz
M03967_2.00 |
Drosophila melanogaster |
HRACCGCAAAACCRCAR |
YTGYGGTTTTGCGGTYD |
SELEX
Nitta et al.(2015)
lz_4
|
0.778
|
0.778
|
run
M06444_2.00 |
Drosophila melanogaster |
WAACCGCAR |
YTGCGGTTW |
B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300
|
0.711
|
0.711
|
For this family, TFs with SR scores > 0.700 will likely have a similar motif |