Gfo_R013848 (Geospiza fortis)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 Gfo_R013848 T319663_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		1.000 1.000
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		1.000 1.000
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		1.000 1.000
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		1.000 1.000
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		1.000 1.000
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		1.000 1.000
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		1.000 1.000
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		1.000 1.000
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		1.000 1.000
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		1.000 1.000
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		1.000 1.000
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		1.000 1.000
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.974 0.974
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.974 0.974
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.974 0.974
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.974 0.974
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.974 0.974
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.974 0.974
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.974 0.974
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.974 0.974
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.974 0.974
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.974 0.974
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.974 0.974
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.974 0.974
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.947 0.947
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.947 0.947
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.947 0.947
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.947 0.947
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.947 0.947
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.947 0.947
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.947 0.947
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.947 0.947
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.947 0.947
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.947 0.947
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.947 0.947
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.947 0.947
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.789 0.789
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.789 0.789
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.789 0.789
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.789 0.789
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R013848 Runt 1 38

Links

Other Runt family TFs
Other Geospiza fortis TFs

189 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSNLEG00000004310 Nomascus leucogenys ENSNLEG00000004310 I 1.000
Runx1 Mus musculus ENSMUSG00000022952 D 1.000
ENSOARG00000013599 Ovis aries ENSOARG00000013599 I 1.000
RUNX1 Oryctolagus cuniculus ENSOCUG00000013731 I 1.000
ENSOPRG00000000765 Ochotona princeps ENSOPRG00000000765 I 1.000
RUNX1 Otolemur garnettii ENSOGAG00000033362 I 1.000
RUNX1 Monodelphis domestica ENSMODG00000021051 I 1.000
RUNX1 Macaca mulatta ENSMMUG00000001649 I 1.000
RUNX1 Homo sapiens ENSG00000159216 D 1.000
ENSFALG00000000025 Ficedula albicollis ENSFALG00000000025 I 1.000
RUNX1 Gallus gallus ENSGALG00000016022 I 1.000
RUNX1 Gorilla gorilla ENSGGOG00000012862 I 1.000
RUNX1 Microcebus murinus ENSMICG00000011998 I 1.000
RUNX1 Loxodonta africana ENSLAFG00000004290 I 1.000
ENSPANG00000007357 Papio anubis ENSPANG00000007357 I 1.000
ENSPPYG00000011394 Pongo abelii ENSPPYG00000011394 I 1.000
Ogr17914 Ophisaurus gracilis Ogr17914 I 1.000
ENSP00000409227-D1 Bos grunniens ENSP00000409227-D1 I 1.000
Pvit_04762 Pogona vitticeps Pvit_04762 I 1.000
runx1.L Xenopus laevis XB-GENE-864949 I 1.000
XP_002939387 Xenopus tropicalis XP_002939387 I 1.000
XP_002939386 Xenopus tropicalis XP_002939386 I 1.000
ENSP00000300305 Macaca fascicularis ENSP00000300305 I 1.000
Cmyd_10021516 Chelonia mydas Cmyd_10021516 I 1.000
RUNX1 Pteropus vampyrus ENSPVAG00000001606 I 1.000
RUNX1 Pan troglodytes ENSPTRG00000013883 I 1.000
Runx1 Rattus norvegicus ENSRNOG00000001704 I 1.000
ENSSHAG00000014782 Sarcophilus harrisii ENSSHAG00000014782 I 1.000
ENSSSCG00000012051 Sus scrofa ENSSSCG00000012051 I 1.000
Runx1 Dipodomys ordii ENSDORG00000004347 I 1.000
ENSPSIG00000017547 Pelodiscus sinensis ENSPSIG00000017547 I 1.000
ENSCSAG00000008703 Chlorocebus sabaeus ENSCSAG00000008703 I 1.000
RUNX1 Bos taurus ENSBTAG00000004742 I 1.000
RUNX1 Callithrix jacchus ENSCJAG00000002816 I 1.000
ENSCPOG00000002684 Cavia porcellus ENSCPOG00000002684 I 1.000
RUNX1 Canis familiaris ENSCAFG00000009596 I 1.000
ENSAMEG00000005325 Ailuropoda melanoleuca ENSAMEG00000005325 I 1.000
RUNX2 Ornithorhynchus anatinus ENSOANG00000008265 I 0.974
ENSAMXG00000017349 Astyanax mexicanus ENSAMXG00000017349 I 0.974
RUNX2 Otolemur garnettii ENSOGAG00000003900 I 0.974
ENSOCUG00000011739 Oryctolagus cuniculus ENSOCUG00000011739 I 0.974
ENSNLEG00000003611 Nomascus leucogenys ENSNLEG00000003611 I 0.974
RUNX2 Monodelphis domestica ENSMODG00000018912 I 0.974
RUNX2 Macaca mulatta ENSMMUG00000019819 I 0.974
ENSMPUG00000001340 Mustela putorius furo ENSMPUG00000001340 I 0.974
Runx2 Mus musculus ENSMUSG00000039153 D 0.974
ENSAMXG00000012244 Astyanax mexicanus ENSAMXG00000012244 I 0.974
RUNX2 Bos taurus ENSBTAG00000004104 I 0.974
RUNX2 Ochotona princeps ENSOPRG00000002943 I 0.974
runx2a Danio rerio ENSDARG00000040261 I 0.974
RUNX2 Tupaia belangeri ENSTBEG00000000948 I 0.974
RUNX2 Tursiops truncatus ENSTTRG00000006943 I 0.974
ENSBTAP00000006227-D1 Bos grunniens ENSBTAP00000006227-D1 I 0.974
runx2.L Xenopus laevis XB-GENE-864817 I 0.974
ENSP00000352514 Macaca fascicularis ENSP00000352514 I 0.974
ENSSTOG00000010163 Ictidomys tridecemlineatus ENSSTOG00000010163 I 0.974
ENSSHAG00000009950 Sarcophilus harrisii ENSSHAG00000009950 I 0.974
ENSPANG00000006186 Papio anubis ENSPANG00000006186 I 0.974
RUNX2 Myotis lucifugus ENSMLUG00000000514 I 0.974
ENSAMEG00000009223 Ailuropoda melanoleuca ENSAMEG00000009223 I 0.974
ENSPPYG00000016664 Pongo abelii ENSPPYG00000016664 I 0.974
Runx2 Rattus norvegicus ENSRNOG00000020193 I 0.974
RUNX2 Pan troglodytes ENSPTRG00000018228 I 0.974
ENSONIG00000004914 Oreochromis niloticus ENSONIG00000004914 I 0.974
ENSTNIG00000018690 Tetraodon nigroviridis ENSTNIG00000018690 I 0.974
runx2b Gasterosteus aculeatus ENSGACG00000012322 I 0.974
RUNX2 Dasypus novemcinctus ENSDNOG00000034361 I 0.974
RUNX1 Gasterosteus aculeatus ENSGACG00000015276 I 0.974
RUNX2 Erinaceus europaeus ENSEEUG00000009243 I 0.974
RUNX2 Gorilla gorilla ENSGGOG00000012890 I 0.974
ENSCSAG00000012528 Chlorocebus sabaeus ENSCSAG00000012528 I 0.974
RUNX1 Equus caballus ENSECAG00000003462 I 0.974
RUNX2 Equus caballus ENSECAG00000020875 I 0.974
RUNX2 Felis catus ENSFCAG00000022480 I 0.974
RUNX2 Homo sapiens ENSG00000124813 D 0.974
RUNX2 Cavia porcellus ENSCPOG00000005277 I 0.974
ENSLACG00000011545 Latimeria chalumnae ENSLACG00000011545 I 0.974
RUNX1 Dasypus novemcinctus ENSDNOG00000015041 I 0.974
ENSLOCG00000015816 Lepisosteus oculatus ENSLOCG00000015816 I 0.974
CABZ01102124.1 Danio rerio ENSDARG00000103592 I 0.974
RUNX2 Loxodonta africana ENSLAFG00000005054 I 0.974
runx2b Danio rerio ENSDARG00000059233 I 0.974
Pvit_01165 Pogona vitticeps Pvit_01165 I 0.947
RUNX3 Myotis lucifugus ENSMLUG00000003395 I 0.947
Afo_R012718 Aptenodytes forsteri Afo_R012718 I 0.947
ENSSHAG00000012559 Sarcophilus harrisii ENSSHAG00000012559 I 0.947
ENSSTOG00000020082 Ictidomys tridecemlineatus ENSSTOG00000020082 I 0.947
Aan_R005895 Calypte anna Aan_R005895 I 0.947
Afo_R008955 Aptenodytes forsteri Afo_R008955 I 0.947
RUNX2 Taeniopygia guttata ENSTGUG00000013249 I 0.947
runx1 Takifugu rubripes ENSTRUG00000012611 I 0.947
ENSXMAG00000018835 Xiphophorus maculatus ENSXMAG00000018835 I 0.947
runx3 Takifugu rubripes ENSTRUG00000001517 I 0.947
Cmyd_10020455 Chelonia mydas Cmyd_10020455 I 0.947
Gfo_R000714 Geospiza fortis Gfo_R000714 I 0.947
runx3 Tetraodon nigroviridis ENSTNIG00000016911 I 0.947
Alligator_sinensis_CCG010991.1 Alligator sinensis Alligator_sinensis_CCG010991.1 I 0.947
runx2 Xenopus tropicalis XB-GENE-482021 I 0.947
ENSNLEG00000009021 Nomascus leucogenys ENSNLEG00000009021 I 0.947
ENSAPLG00000007026 Anas platyrhynchos ENSAPLG00000007026 I 0.947
ENSGALG00000026484 Gallus gallus ENSGALG00000026484 I 0.947
ENSONIG00000008210 Oreochromis niloticus ENSONIG00000008210 I 0.947
ENSLOCG00000002744 Lepisosteus oculatus ENSLOCG00000002744 I 0.947
ENSMPUG00000015804 Mustela putorius furo ENSMPUG00000015804 I 0.947
ENSMGAG00000014534 Meleagris gallopavo ENSMGAG00000014534 I 0.947
ENSMGAG00000002035 Meleagris gallopavo ENSMGAG00000002035 I 0.947
RUNX3 Bos taurus ENSBTAG00000019800 I 0.947
ENSAMXG00000004048 Astyanax mexicanus ENSAMXG00000004048 I 0.947
RUNX3 Callithrix jacchus ENSCJAG00000020815 I 0.947
ENSFALG00000001493 Ficedula albicollis ENSFALG00000001493 I 0.947
runx3 Danio rerio ENSDARG00000052826 I 0.947
ENSPFOG00000003997 Poecilia formosa ENSPFOG00000003997 I 0.947
runx3 Gasterosteus aculeatus ENSGACG00000007301 I 0.947
RUNX2 Anolis carolinensis ENSACAG00000013003 I 0.947
runx3 Oryzias latipes ENSORLG00000017515 I 0.947
runx3 Xenopus tropicalis XB-GENE-487784 I 0.921
ENSPPYG00000001714 Pongo abelii ENSPPYG00000001714 I 0.921
runx2 Takifugu rubripes ENSTRUG00000003501 I 0.921
RUNX1 Tursiops truncatus ENSTTRG00000014160 I 0.921
ENSTSYG00000005097 Tarsius syrichta ENSTSYG00000005097 I 0.921
ENSAMXG00000000881 Astyanax mexicanus ENSAMXG00000000881 I 0.895
ENSCAFG00000031052 Canis familiaris ENSCAFG00000031052 I 0.895
ENSLACG00000015930 Latimeria chalumnae ENSLACG00000015930 I 0.868
ENSLACG00000013776 Latimeria chalumnae ENSLACG00000013776 I 0.868
Sakowv30005496m.g Saccoglossus kowalevskii Sakowv30005496m.g I 0.868
GA22609 Drosophila pseudoobscura FBgn0244012 I 0.789
GE17788 Drosophila yakuba FBgn0235232 I 0.789
ML03045a Mnemiopsis leidyi ML03045a I 0.789
tetur01g02340 Tetranychus urticae tetur01g02340 I 0.789
Cflo_03911--XP_394014.2_APIME Camponotus floridanus Cflo_03911--XP_394014.2_APIME I 0.789
GK25373 Drosophila willistoni FBgn0227332 I 0.789
NV11000 Nasonia vitripennis NV11000 I 0.789
GM22478 Drosophila sechellia FBgn0177348 I 0.789
GL16499 Drosophila persimilis FBgn0154103 I 0.789
GG18309 Drosophila erecta FBgn0110525 I 0.789
GD16951 Drosophila simulans FBgn0188530 I 0.789
lz Drosophila melanogaster FBgn0002576 D 0.789
LCUP002656 Lucilia cuprina LCUP002656 I 0.763
DAPPUDRAFT_290557 Daphnia pulex DAPPUDRAFT_290557 I 0.763
LCUP002647 Lucilia cuprina LCUP002647 I 0.763
Hsal_12319--XP_394016.2_APIME Harpegnathos saltator Hsal_12319--XP_394016.2_APIME I 0.763
HMEL009842 Heliconius melpomene HMEL009842 I 0.763
ACEP16406 Atta cephalotes ACEP16406 I 0.763
AAEL006160 Aedes aegypti AAEL006160 I 0.763
MDOA010744 Musca domestica MDOA010744 I 0.763
BGLB004758 Biomphalaria glabrata BGLB004758 I 0.763
ASTEI07771 Anopheles stephensi ASTEI07771 I 0.763
AATE002063 Anopheles atroparvus AATE002063 I 0.763
Cflo_03909--XP_394016.2_APIME Camponotus floridanus Cflo_03909--XP_394016.2_APIME I 0.763
ENSXMAG00000006715 Xiphophorus maculatus ENSXMAG00000006715 I 0.763
SINV13317 Solenopsis invicta SINV13317 I 0.763
TC005566 Tribolium castaneum TC005566 I 0.763
RPRC005391 Rhodnius prolixus RPRC005391 I 0.763
YQE_12218 Dendroctonus ponderosae YQE_12218 I 0.763
CPIJ006373 Culex quinquefasciatus CPIJ006373 I 0.737
PPAI007797 Phlebotomus papatasi PPAI007797 I 0.737
CpipJ_CPIJ006373 Culex pipiens CpipJ_CPIJ006373 I 0.737
LDEC020504 Leptinotarsa decemlineata LDEC020504 N 0.737
ACYPI007541 Acyrthosiphon pisum ACYPI007541 I 0.737
CLEC011124 Cimex lectularius CLEC011124 I 0.737
ADAC004330 Anopheles darlingi ADAC004330 I 0.737
ACEP16400 Atta cephalotes ACEP16400 I 0.714
RunxB Drosophila melanogaster FBgn0259162 I 0.711
AALB009220 Anopheles albimanus AALB009220 I 0.711
PHUM333340 Pediculus humanus PHUM333340 I 0.711
ENSGACG00000011721 Gasterosteus aculeatus ENSGACG00000011721 I 0.711
GD17495 Drosophila simulans FBgn0189047 I 0.711
MCINX000302 Melitaea cinxia MCINX000302 I 0.711
GL15800 Drosophila persimilis FBgn0153404 I 0.711
EmuJ_000490800 Echinococcus multilocularis EmuJ_000490800 I 0.711
KGM_21067 Danaus plexippus KGM_21067 I 0.711
LLOJ002717 Lutzomyia longipalpis LLOJ002717 I 0.711
GK19810 Drosophila willistoni FBgn0221808 I 0.711
AFAF013225 Anopheles farauti AFAF013225 I 0.711
GH17737 Drosophila grimshawi FBgn0125207 I 0.711
ACYPI001442 Acyrthosiphon pisum ACYPI001442 I 0.711
GA13742 Drosophila pseudoobscura FBgn0073778 I 0.711
TC006536 Tribolium castaneum TC006536 I 0.711
Hsal_04635--XP_394013.3_APIME Harpegnathos saltator Hsal_04635--XP_394013.3_APIME I 0.711
GM23044 Drosophila sechellia FBgn0177912 I 0.711
ACEP16410 Atta cephalotes ACEP16410 I 0.711
DAPPUDRAFT_290556 Daphnia pulex DAPPUDRAFT_290556 N 0.711
BGIBMGA008906 Bombyx mori BGIBMGA008906 I 0.711
GF15967 Drosophila ananassae FBgn0092990 I 0.711
GG19691 Drosophila erecta FBgn0111893 I 0.711
GJ19245 Drosophila virilis FBgn0206390 I 0.711
GE17890 Drosophila yakuba FBgn0235328 I 0.711
MESCA007078 Megaselia scalaris MESCA007078 I 0.703
AALB007752 Anopheles albimanus AALB007752 I 0.700