Ocbimv22002042m.g (Octopus bimaculoides)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 Ocbimv22002042m.g T319677_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RUNX3
M03464_2.00
Homo sapiens
HRACCGCAAACCRCAN

NTGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX3_1
0.735 0.735
RUNX3
M03465_2.00
Homo sapiens
WAACCRCARN

NYTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX3_2
0.735 0.735
RUNX3
M03466_2.00
Homo sapiens
HDACCRCADWAACCRCRN

NYGYGGTTWHTGYGGTHD
SELEX
Jolma et al.(2013)
RUNX3_3
0.735 0.735
RUNX3
M03467_2.00
Homo sapiens
HRACCRCAAH

DTTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX3_4
0.735 0.735
RUNX3
M02751_2.00
Homo sapiens
WACCRCAM

KTGYGGTW
SELEX
Jolma et al.(2010)
RUNX3_monomer
0.735 0.735
RUNX3
M05731_2.00
Homo sapiens
YWAACCGCAAAAACCGCARV

BYTGCGGTTTTTGCGGTTWR
SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX
0.735 0.735
Runx1
M08163_2.00
Mus musculus
HRRCCACARVN

NBYTGTGGYYD
ChIP-seq
Mathelier et al.(2014)
MA0002.2
0.735 0.735
RUNX1
M09371_2.00
Homo sapiens
NWAACCACARV

BYTGTGGTTWN
Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A
0.735 0.735
RUNX3
M09369_2.00
Homo sapiens
HAACCACARN

NYTGTGGTTD
Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A
0.735 0.735
Runx1
M09372_2.00
Mus musculus
VWRACCACARVV

BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A
0.735 0.735
Runx3
M09374_2.00
Mus musculus
NHRACCACARVN

NBYTGTGGTYDN
Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A
0.735 0.735
RUNX1
M09632_2.00
Homo sapiens
HAACCACADV

BHTGTGGTTD
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180
0.735 0.735
RUNX1
M09631_2.00
Homo sapiens
VCCACWTCCTBY

RVAGGAWGTGGB
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954
0.735 0.735
Runx1
M09633_2.00
Mus musculus
NWAACCACAR

YTGTGGTTWN
Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178
0.735 0.735
RUNX1
M11258_2.00
Homo sapiens
ACCRCA

TGYGGT
Transfac
Matys et al.(2006)
V$AML1_01
0.735 0.735
RUNX1
M11259_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4_01
0.735 0.735
RUNX1
M11260_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4_02
0.735 0.735
RUNX1
M11261_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4
0.735 0.735
RUNX1
M11262_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q5
0.735 0.735
RUNX1
M11263_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q6
0.735 0.735
RUNX3
M11252_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3_01
0.735 0.735
RUNX3
M11253_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3
0.735 0.735
RUNX3
M11254_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q4
0.735 0.735
RUNX3
M05732_2.00
Homo sapiens
HWAACCACRAAAACCACRARN

NYTYGTGGTTTTYGTGGTTWD
SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX
0.735 0.735
Runx2
M01307_2.00
Mus musculus
NHDACCRCAN

NTGYGGTHDN
PBM
Lambert et al.(2019)
pTH9764
0.725 0.725
RUNX2
M03468_2.00
Homo sapiens
HRACCGCAAACCRCRD

HYGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX2_1
0.725 0.725
RUNX2
M03469_2.00
Homo sapiens
HRACCRCADWWACCRCAD

HTGYGGTWWHTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX2_2
0.725 0.725
RUNX2
M03470_2.00
Homo sapiens
WAACCRCAR

YTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX2_3
0.725 0.725
RUNX2
M05733_2.00
Homo sapiens
NHRACCRCADWAACCRCAVN

NBTGYGGTTWHTGYGGTYDN
SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX
0.725 0.725
RUNX2
M09370_2.00
Homo sapiens
MMHAACCACAVVMH

DKBBTGTGGTTDKK
Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A
0.725 0.725
Runx2
M09373_2.00
Mus musculus
VWRACCACARVV

BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A
0.725 0.725
RUNX2
M09630_2.00
Homo sapiens
NHVACCACANNN

NNNTGTGGTBDN
Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889
0.725 0.725
RUNX2
M11255_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q3
0.725 0.725
RUNX2
M11256_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q6
0.725 0.725
RUNX2
M11257_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OSF2_Q6
0.725 0.725
RUNX2
M05734_2.00
Homo sapiens
NWAACCACRAAAACCACRRN

NYYGTGGTTTTYGTGGTTWN
SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX
0.725 0.725
lz
M03964_2.00
Drosophila melanogaster
HRACCGCAAHM

KDTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_1
0.716 0.716
lz
M03965_2.00
Drosophila melanogaster
HVACCRCARWAACCRCAV

BTGYGGTTWYTGYGGTBD
SELEX
Nitta et al.(2015)
lz_2
0.716 0.716
lz
M03966_2.00
Drosophila melanogaster
WRACCRCAWTAACCRCAA

TTGYGGTTAWTGYGGTYW
SELEX
Nitta et al.(2015)
lz_3
0.716 0.716
lz
M03967_2.00
Drosophila melanogaster
HRACCGCAAAACCRCAR

YTGYGGTTTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_4
0.716 0.716
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22002042m.p Runt 30 132

Links

Other Runt family TFs
Other Octopus bimaculoides TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SMAR009403 Strigamia maritima SMAR009403 I 0.837
ACYPI007541 Acyrthosiphon pisum ACYPI007541 I 0.784
ENSTRUG00000017865 Takifugu rubripes ENSTRUG00000017865 I 0.775
SINV13345 Solenopsis invicta SINV13345 I 0.772
HMEL009843 Heliconius melpomene HMEL009843 I 0.768
RPRC000026 Rhodnius prolixus RPRC000026 I 0.766
LCUP002652 Lucilia cuprina LCUP002652 I 0.766
ISCW023333 Ixodes scapularis ISCW023333 I 0.764
AEPI011470 Anopheles epiroticus AEPI011470 I 0.761
CPIJ016826 Culex quinquefasciatus CPIJ016826 I 0.758
CpipJ_CPIJ006369 Culex pipiens CpipJ_CPIJ006369 I 0.758
CpipJ_CPIJ016826 Culex pipiens CpipJ_CPIJ016826 I 0.758
CPIJ006369 Culex quinquefasciatus CPIJ006369 I 0.758
MESCA007079 Megaselia scalaris MESCA007079 I 0.756
AALB007753 Anopheles albimanus AALB007753 I 0.755
ASIS002518 Anopheles sinensis ASIS002518 I 0.755
AQUA008686 Anopheles quadriannulatus AQUA008686 I 0.747
ACEP16391 Atta cephalotes ACEP16391 I 0.745
TC006536 Tribolium castaneum TC006536 I 0.745
Gfo_R015914 Geospiza fortis Gfo_R015914 I 0.745
GI15484 Drosophila mojavensis FBgn0138233 I 0.742
RUNX2 Pteropus vampyrus ENSPVAG00000001720 I 0.739
KGM_02818 Danaus plexippus KGM_02818 I 0.735
ENSLACG00000013776 Latimeria chalumnae ENSLACG00000013776 I 0.735
ACHR007816 Anopheles christyi ACHR007816 I 0.735
AARA011332 Anopheles arabiensis AARA011332 I 0.732
ACEP16397 Atta cephalotes ACEP16397 I 0.728
ACEP16409 Atta cephalotes ACEP16409 I 0.727
LLOJ002049 Lutzomyia longipalpis LLOJ002049 I 0.727
RUNX1 Monodelphis domestica ENSMODG00000021051 I 0.725
Runx2 Mus musculus ENSMUSG00000039153 D 0.725
RUNX1 Pteropus vampyrus ENSPVAG00000001606 I 0.725
ENSSHAG00000014782 Sarcophilus harrisii ENSSHAG00000014782 I 0.725
RUNX2 Homo sapiens ENSG00000124813 D 0.725
RUNX1 Homo sapiens ENSG00000159216 D 0.724
AFAF002111 Anopheles farauti AFAF002111 I 0.724
runx1 Danio rerio ENSDARG00000087646 I 0.723
PPAI010985 Phlebotomus papatasi PPAI010985 I 0.722
CPIJ006372 Culex quinquefasciatus CPIJ006372 I 0.722
CpipJ_CPIJ006372 Culex pipiens CpipJ_CPIJ006372 I 0.722
LCUP002657 Lucilia cuprina LCUP002657 I 0.719
AFUN010424 Anopheles funestus AFUN010424 I 0.717
AFUN005474 Anopheles funestus AFUN005474 I 0.717
CLEC011127 Cimex lectularius CLEC011127 I 0.716
ENSSSCG00000025261 Sus scrofa ENSSSCG00000025261 I 0.714
BGIBMGA008970 Bombyx mori BGIBMGA008970 I 0.713
ACUA002933 Anopheles culicifacies ACUA002933 I 0.713
Runx1 Mus musculus ENSMUSG00000022952 D 0.710
SBAD_0000678401 Soboliphyme baturini SBAD_0000678401 N 0.710
LDEC020505 Leptinotarsa decemlineata LDEC020505 I 0.710
ADIR001029 Anopheles dirus ADIR001029 I 0.707
LDEC003023 Leptinotarsa decemlineata LDEC003023 I 0.705
CLEC011123 Cimex lectularius CLEC011123 I 0.703
AMEC011614 Anopheles melas AMEC011614 I 0.702
LDEC006650 Leptinotarsa decemlineata LDEC006650 I 0.700