LDEC003023 (Leptinotarsa decemlineata)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 LDEC003023 T319694_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RUNX3
M03464_2.00
Homo sapiens
HRACCGCAAACCRCAN

NTGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX3_1
0.747 0.747
RUNX3
M03465_2.00
Homo sapiens
WAACCRCARN

NYTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX3_2
0.747 0.747
RUNX3
M03466_2.00
Homo sapiens
HDACCRCADWAACCRCRN

NYGYGGTTWHTGYGGTHD
SELEX
Jolma et al.(2013)
RUNX3_3
0.747 0.747
RUNX3
M03467_2.00
Homo sapiens
HRACCRCAAH

DTTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX3_4
0.747 0.747
RUNX3
M02751_2.00
Homo sapiens
WACCRCAM

KTGYGGTW
SELEX
Jolma et al.(2010)
RUNX3_monomer
0.747 0.747
RUNX3
M05731_2.00
Homo sapiens
YWAACCGCAAAAACCGCARV

BYTGCGGTTTTTGCGGTTWR
SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX
0.747 0.747
RUNX3
M09369_2.00
Homo sapiens
HAACCACARN

NYTGTGGTTD
Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A
0.747 0.747
Runx3
M09374_2.00
Mus musculus
NHRACCACARVN

NBYTGTGGTYDN
Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A
0.747 0.747
RUNX3
M11252_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3_01
0.747 0.747
RUNX3
M11253_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3
0.747 0.747
RUNX3
M11254_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q4
0.747 0.747
RUNX3
M05732_2.00
Homo sapiens
HWAACCACRAAAACCACRARN

NYTYGTGGTTTTYGTGGTTWD
SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX
0.747 0.747
Runx2
M01307_2.00
Mus musculus
NHDACCRCAN

NTGYGGTHDN
PBM
Lambert et al.(2019)
pTH9764
0.737 0.737
RUNX2
M03468_2.00
Homo sapiens
HRACCGCAAACCRCRD

HYGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX2_1
0.737 0.737
RUNX2
M03469_2.00
Homo sapiens
HRACCRCADWWACCRCAD

HTGYGGTWWHTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX2_2
0.737 0.737
RUNX2
M03470_2.00
Homo sapiens
WAACCRCAR

YTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX2_3
0.737 0.737
lz
M03964_2.00
Drosophila melanogaster
HRACCGCAAHM

KDTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_1
0.737 0.737
lz
M03965_2.00
Drosophila melanogaster
HVACCRCARWAACCRCAV

BTGYGGTTWYTGYGGTBD
SELEX
Nitta et al.(2015)
lz_2
0.737 0.737
lz
M03966_2.00
Drosophila melanogaster
WRACCRCAWTAACCRCAA

TTGYGGTTAWTGYGGTYW
SELEX
Nitta et al.(2015)
lz_3
0.737 0.737
lz
M03967_2.00
Drosophila melanogaster
HRACCGCAAAACCRCAR

YTGYGGTTTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_4
0.737 0.737
RUNX2
M05733_2.00
Homo sapiens
NHRACCRCADWAACCRCAVN

NBTGYGGTTWHTGYGGTYDN
SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX
0.737 0.737
RUNX2
M09370_2.00
Homo sapiens
MMHAACCACAVVMH

DKBBTGTGGTTDKK
Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A
0.737 0.737
Runx2
M09373_2.00
Mus musculus
VWRACCACARVV

BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A
0.737 0.737
RUNX2
M09630_2.00
Homo sapiens
NHVACCACANNN

NNNTGTGGTBDN
Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889
0.737 0.737
RUNX2
M11255_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q3
0.737 0.737
RUNX2
M11256_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q6
0.737 0.737
RUNX2
M11257_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OSF2_Q6
0.737 0.737
RUNX2
M05734_2.00
Homo sapiens
NWAACCACRAAAACCACRRN

NYYGTGGTTTTYGTGGTTWN
SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX
0.737 0.737
Runx1
M08163_2.00
Mus musculus
HRRCCACARVN

NBYTGTGGYYD
ChIP-seq
Mathelier et al.(2014)
MA0002.2
0.726 0.726
RUNX1
M09371_2.00
Homo sapiens
NWAACCACARV

BYTGTGGTTWN
Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A
0.726 0.726
Runx1
M09372_2.00
Mus musculus
VWRACCACARVV

BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A
0.726 0.726
RUNX1
M09632_2.00
Homo sapiens
HAACCACADV

BHTGTGGTTD
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180
0.726 0.726
RUNX1
M09631_2.00
Homo sapiens
VCCACWTCCTBY

RVAGGAWGTGGB
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954
0.726 0.726
Runx1
M09633_2.00
Mus musculus
NWAACCACAR

YTGTGGTTWN
Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178
0.726 0.726
RUNX1
M11258_2.00
Homo sapiens
ACCRCA

TGYGGT
Transfac
Matys et al.(2006)
V$AML1_01
0.726 0.726
RUNX1
M11259_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4_01
0.726 0.726
RUNX1
M11260_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4_02
0.726 0.726
RUNX1
M11261_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4
0.726 0.726
RUNX1
M11262_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q5
0.726 0.726
RUNX1
M11263_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q6
0.726 0.726
run
M06444_2.00
Drosophila melanogaster
WAACCGCAR

YTGCGGTTW
B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300
0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LDEC003023-PA Runt 41 135

Links

Other Runt family TFs
Other Leptinotarsa decemlineata TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL006160 Aedes aegypti AAEL006160 I 0.779
AALB007753 Anopheles albimanus AALB007753 I 0.787
AARA011332 Anopheles arabiensis AARA011332 I 0.763
AARA011472 Anopheles arabiensis AARA011472 I 0.737
AATE002063 Anopheles atroparvus AATE002063 I 0.779
ACEP16391 Atta cephalotes ACEP16391 I 0.768
ACEP16409 Atta cephalotes ACEP16409 I 0.811
ACEP16410 Atta cephalotes ACEP16410 I 0.716
ACHR007816 Anopheles christyi ACHR007816 I 0.779
ACOM031089 Anopheles coluzzii ACOM031089 I 0.737
ACUA000036 Anopheles culicifacies ACUA000036 I 0.747
ACUA002933 Anopheles culicifacies ACUA002933 I 0.733
ACYPI001442 Acyrthosiphon pisum ACYPI001442 I 0.758
ACYPI007541 Acyrthosiphon pisum ACYPI007541 I 0.758
ADIR001029 Anopheles dirus ADIR001029 I 0.747
AEPI011470 Anopheles epiroticus AEPI011470 I 0.779
AFAF001885 Anopheles farauti AFAF001885 N 0.728
AFAF002111 Anopheles farauti AFAF002111 I 0.755
AFUN005474 Anopheles funestus AFUN005474 I 0.772
AFUN010424 Anopheles funestus AFUN010424 I 0.779
AGAP001094 Anopheles gambiae AGAP001094 I 0.737
AMEC007551 Anopheles melas AMEC007551 I 0.737
AMEC011614 Anopheles melas AMEC011614 I 0.712
AMEM004753 Anopheles merus AMEM004753 I 0.737
AMIN005760 Anopheles minimus AMIN005760 I 0.718
AQUA008686 Anopheles quadriannulatus AQUA008686 I 0.779
AQUA009970 Anopheles quadriannulatus AQUA009970 I 0.737
ASIS002518 Anopheles sinensis ASIS002518 I 0.787
ASTEI07771 Anopheles stephensi ASTEI07771 I 0.779
BGIBMGA008906 Bombyx mori BGIBMGA008906 I 0.747
BGIBMGA008970 Bombyx mori BGIBMGA008970 I 0.723
Cflo_03909--XP_394016.2_APIME Camponotus floridanus Cflo_03909--XP_394016.2_APIME I 0.811
CLEC011116 Cimex lectularius CLEC011116 I 0.718
CLEC011123 Cimex lectularius CLEC011123 I 0.743
CLEC011127 Cimex lectularius CLEC011127 I 0.779
Cmyd_10020455 Chelonia mydas Cmyd_10020455 I 0.737
CPIJ006369 Culex quinquefasciatus CPIJ006369 I 0.758
CPIJ006372 Culex quinquefasciatus CPIJ006372 I 0.753
CPIJ016826 Culex quinquefasciatus CPIJ016826 I 0.779
CpipJ_CPIJ006369 Culex pipiens CpipJ_CPIJ006369 I 0.758
CpipJ_CPIJ006372 Culex pipiens CpipJ_CPIJ006372 I 0.753
CpipJ_CPIJ016826 Culex pipiens CpipJ_CPIJ016826 I 0.779
RUNX2 Anolis carolinensis ENSACAG00000013003 I 0.737
ENSAMXG00000012244 Astyanax mexicanus ENSAMXG00000012244 I 0.716
ENSAMXG00000017349 Astyanax mexicanus ENSAMXG00000017349 I 0.726
RUNX3 Callithrix jacchus ENSCJAG00000020815 I 0.737
runx2a Danio rerio ENSDARG00000040261 I 0.747
runx2b Danio rerio ENSDARG00000059233 I 0.726
runx1 Danio rerio ENSDARG00000087646 I 0.723
RUNX1 Dasypus novemcinctus ENSDNOG00000015041 I 0.726
RUNX2 Homo sapiens ENSG00000124813 D 0.737
RUNX1 Homo sapiens ENSG00000159216 D 0.711
runx2b Gasterosteus aculeatus ENSGACG00000012322 I 0.747
ENSLACG00000013776 Latimeria chalumnae ENSLACG00000013776 I 0.737
ENSLACG00000015930 Latimeria chalumnae ENSLACG00000015930 I 0.726
RUNX1 Monodelphis domestica ENSMODG00000021051 I 0.737
ENSMPUG00000001340 Mustela putorius furo ENSMPUG00000001340 I 0.726
Runx1 Mus musculus ENSMUSG00000022952 D 0.726
Runx2 Mus musculus ENSMUSG00000039153 D 0.737
ENSOPRG00000000765 Ochotona princeps ENSOPRG00000000765 I 0.716
ENSP00000300305 Macaca fascicularis ENSP00000300305 I 0.737
ENSPPYG00000001714 Pongo abelii ENSPPYG00000001714 I 0.747
RUNX1 Pteropus vampyrus ENSPVAG00000001606 I 0.737
RUNX2 Pteropus vampyrus ENSPVAG00000001720 I 0.761
ENSSHAG00000014782 Sarcophilus harrisii ENSSHAG00000014782 I 0.737
ENSSSCG00000025261 Sus scrofa ENSSSCG00000025261 I 0.724
RUNX2 Taeniopygia guttata ENSTGUG00000013249 I 0.737
runx3 Tetraodon nigroviridis ENSTNIG00000016911 I 0.747
runx2 Takifugu rubripes ENSTRUG00000003501 I 0.747
runx1 Takifugu rubripes ENSTRUG00000012611 I 0.705
ENSTSYG00000005097 Tarsius syrichta ENSTSYG00000005097 I 0.726
RUNX1 Tursiops truncatus ENSTTRG00000014160 I 0.726
run Drosophila melanogaster FBgn0003300 D 0.705
GA13742 Drosophila pseudoobscura FBgn0073778 I 0.747
GF15967 Drosophila ananassae FBgn0092990 I 0.747
GG19691 Drosophila erecta FBgn0111893 I 0.747
GH17737 Drosophila grimshawi FBgn0125207 I 0.747
GI15484 Drosophila mojavensis FBgn0138233 I 0.742
GL15800 Drosophila persimilis FBgn0153404 I 0.747
GM23044 Drosophila sechellia FBgn0177912 I 0.747
GD17495 Drosophila simulans FBgn0189047 I 0.747
GJ19245 Drosophila virilis FBgn0206390 I 0.747
GK19810 Drosophila willistoni FBgn0221808 I 0.747
GE17890 Drosophila yakuba FBgn0235328 I 0.747
RunxB Drosophila melanogaster FBgn0259162 I 0.747
Gfo_R015914 Geospiza fortis Gfo_R015914 I 0.734
HMEL009843 Heliconius melpomene HMEL009843 I 0.758
Hsal_04635--XP_394013.3_APIME Harpegnathos saltator Hsal_04635--XP_394013.3_APIME I 0.758
Hsal_12319--XP_394016.2_APIME Harpegnathos saltator Hsal_12319--XP_394016.2_APIME I 0.811
ISCW023333 Ixodes scapularis ISCW023333 I 0.726
KGM_02818 Danaus plexippus KGM_02818 I 0.735
KGM_21067 Danaus plexippus KGM_21067 I 0.747
LCUP002652 Lucilia cuprina LCUP002652 I 0.766
LCUP002657 Lucilia cuprina LCUP002657 I 0.740
LDEC006650 Leptinotarsa decemlineata LDEC006650 I 0.740
LDEC020505 Leptinotarsa decemlineata LDEC020505 I 0.750
LLOJ002049 Lutzomyia longipalpis LLOJ002049 I 0.747
LLOJ002717 Lutzomyia longipalpis LLOJ002717 I 0.737
MCINX000302 Melitaea cinxia MCINX000302 I 0.737
MESCA007079 Megaselia scalaris MESCA007079 I 0.867
Ocbimv22002042m.g Octopus bimaculoides Ocbimv22002042m.g I 0.705
PHUM333310 Pediculus humanus PHUM333310 I 0.768
PPAI005889 Phlebotomus papatasi PPAI005889 I 0.761
PPAI010985 Phlebotomus papatasi PPAI010985 I 0.779
Pvit_01165 Pogona vitticeps Pvit_01165 I 0.737
RPRC000026 Rhodnius prolixus RPRC000026 I 0.777
RPRC005391 Rhodnius prolixus RPRC005391 I 0.821
Sakowv30005496m.g Saccoglossus kowalevskii Sakowv30005496m.g I 0.737
SINV13317 Solenopsis invicta SINV13317 I 0.811
SINV13345 Solenopsis invicta SINV13345 I 0.783
SMAR009403 Strigamia maritima SMAR009403 I 0.789
TC006536 Tribolium castaneum TC006536 I 0.811
TC006542 Tribolium castaneum TC006542 I 0.747
tetur01g02340 Tetranychus urticae tetur01g02340 I 0.726
runx2.L Xenopus laevis XB-GENE-864817 I 0.705
XP_002939386 Xenopus tropicalis XP_002939386 I 0.716
XP_002939387 Xenopus tropicalis XP_002939387 I 0.716