CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

PPAI007797 *(Phlebotomus papatasi)* Runt
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00853 (Runt)	IPR013524	PPAI007797	T319782_2.00	Vectorbase (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
lz M03964_2.00	Drosophila melanogaster	HRACCGCAAHM	KDTTGCGGTYD	SELEX Nitta et al.(2015) lz_1	0.825	0.825
lz M03965_2.00	Drosophila melanogaster	HVACCRCARWAACCRCAV	BTGYGGTTWYTGYGGTBD	SELEX Nitta et al.(2015) lz_2	0.825	0.825
lz M03966_2.00	Drosophila melanogaster	WRACCRCAWTAACCRCAA	TTGYGGTTAWTGYGGTYW	SELEX Nitta et al.(2015) lz_3	0.825	0.825
lz M03967_2.00	Drosophila melanogaster	HRACCGCAAAACCRCAR	YTGYGGTTTTGCGGTYD	SELEX Nitta et al.(2015) lz_4	0.825	0.825
Runx2 M01307_2.00	Mus musculus	NHDACCRCAN	NTGYGGTHDN	PBM Lambert et al.(2019) pTH9764	0.725	0.725
RUNX2 M03468_2.00	Homo sapiens	HRACCGCAAACCRCRD	HYGYGGTTTGCGGTYD	SELEX Jolma et al.(2013) RUNX2_1	0.725	0.725
RUNX2 M03469_2.00	Homo sapiens	HRACCRCADWWACCRCAD	HTGYGGTWWHTGYGGTYD	SELEX Jolma et al.(2013) RUNX2_2	0.725	0.725
RUNX2 M03470_2.00	Homo sapiens	WAACCRCAR	YTGYGGTTW	SELEX Jolma et al.(2013) RUNX2_3	0.725	0.725
RUNX2 M05733_2.00	Homo sapiens	NHRACCRCADWAACCRCAVN	NBTGYGGTTWHTGYGGTYDN	SELEX Yin et al.(2017) RUNX2_eDBD_HT-SELEX	0.725	0.725
run M06444_2.00	Drosophila melanogaster	WAACCGCAR	YTGCGGTTW	B1H Zhu et al.(2011) run_Bgb_NBT_FBgn0003300	0.725	0.725
RUNX2 M09370_2.00	Homo sapiens	MMHAACCACAVVMH	DKBBTGTGGTTDKK	Misc Kulakovskiy et al.(2013) RUNX2_HUMAN.H11MO.0.A	0.725	0.725
Runx2 M09373_2.00	Mus musculus	VWRACCACARVV	BBYTGTGGTYWB	Misc Kulakovskiy et al.(2013) RUNX2_MOUSE.H11MO.0.A	0.725	0.725
RUNX2 M09630_2.00	Homo sapiens	NHVACCACANNN	NNNTGTGGTBDN	Misc Heinz et al.(2010) PCa-RUNX2_GSE33889	0.725	0.725
RUNX2 M11255_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML3_Q3	0.725	0.725
RUNX2 M11256_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML3_Q6	0.725	0.725
RUNX2 M11257_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$OSF2_Q6	0.725	0.725
RUNX2 M05734_2.00	Homo sapiens	NWAACCACRAAAACCACRRN	NYYGTGGTTTTYGTGGTTWN	SELEX Yin et al.(2017) RUNX2_eDBD_Methyl-HT-SELEX	0.725	0.725
RUNX3 M03464_2.00	Homo sapiens	HRACCGCAAACCRCAN	NTGYGGTTTGCGGTYD	SELEX Jolma et al.(2013) RUNX3_1	0.700	0.700
RUNX3 M03465_2.00	Homo sapiens	WAACCRCARN	NYTGYGGTTW	SELEX Jolma et al.(2013) RUNX3_2	0.700	0.700
RUNX3 M03466_2.00	Homo sapiens	HDACCRCADWAACCRCRN	NYGYGGTTWHTGYGGTHD	SELEX Jolma et al.(2013) RUNX3_3	0.700	0.700
RUNX3 M03467_2.00	Homo sapiens	HRACCRCAAH	DTTGYGGTYD	SELEX Jolma et al.(2013) RUNX3_4	0.700	0.700
RUNX3 M02751_2.00	Homo sapiens	WACCRCAM	KTGYGGTW	SELEX Jolma et al.(2010) RUNX3_monomer	0.700	0.700
RUNX3 M05731_2.00	Homo sapiens	YWAACCGCAAAAACCGCARV	BYTGCGGTTTTTGCGGTTWR	SELEX Yin et al.(2017) RUNX3_FL_HT-SELEX	0.700	0.700
Runx1 M08163_2.00	Mus musculus	HRRCCACARVN	NBYTGTGGYYD	ChIP-seq Mathelier et al.(2014) MA0002.2	0.700	0.700
RUNX1 M09371_2.00	Homo sapiens	NWAACCACARV	BYTGTGGTTWN	Misc Kulakovskiy et al.(2013) RUNX1_HUMAN.H11MO.0.A	0.700	0.700
RUNX3 M09369_2.00	Homo sapiens	HAACCACARN	NYTGTGGTTD	Misc Kulakovskiy et al.(2013) RUNX3_HUMAN.H11MO.0.A	0.700	0.700
Runx1 M09372_2.00	Mus musculus	VWRACCACARVV	BBYTGTGGTYWB	Misc Kulakovskiy et al.(2013) RUNX1_MOUSE.H11MO.0.A	0.700	0.700
Runx3 M09374_2.00	Mus musculus	NHRACCACARVN	NBYTGTGGTYDN	Misc Kulakovskiy et al.(2013) RUNX3_MOUSE.H11MO.0.A	0.700	0.700
RUNX1 M09632_2.00	Homo sapiens	HAACCACADV	BHTGTGGTTD	Misc Heinz et al.(2010) Jurkat-RUNX1_GSE29180	0.700	0.700
RUNX1 M09631_2.00	Homo sapiens	VCCACWTCCTBY	RVAGGAWGTGGB	Misc Heinz et al.(2010) Jurkat-RUNX1_GSE17954	0.700	0.700
Runx1 M09633_2.00	Mus musculus	NWAACCACAR	YTGTGGTTWN	Misc Heinz et al.(2010) HPC7-Runx1_GSE22178	0.700	0.700
RUNX1 M11258_2.00	Homo sapiens	ACCRCA	TGYGGT	Transfac Matys et al.(2006) V$AML1_01	0.700	0.700
RUNX1 M11259_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4_01	0.700	0.700
RUNX1 M11260_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4_02	0.700	0.700
RUNX1 M11261_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4	0.700	0.700
RUNX1 M11262_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q5	0.700	0.700
RUNX1 M11263_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q6	0.700	0.700
RUNX3 M11252_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q3_01	0.700	0.700
RUNX3 M11253_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q3	0.700	0.700
RUNX3 M11254_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q4	0.700	0.700
RUNX3 M05732_2.00	Homo sapiens	HWAACCACRAAAACCACRARN	NYTYGTGGTTTTYGTGGTTWD	SELEX Yin et al.(2017) RUNX3_FL_Methyl-HT-SELEX	0.700	0.700
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
PPAI007797-PA	Runt	2	41	RYRKSFTLTITVSTTPPQVTTYSKAIKVTVDGPREPRSKT

Links
Other Runt family TFs
Other *Phlebotomus papatasi* TFs

41 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
HMEL009842	Heliconius melpomene	HMEL009842	I	0.923
AMAM011616	Anopheles maculatus	AMAM011616	I	0.920
AQUA009446	Anopheles quadriannulatus	AQUA009446	I	0.920
CpipJ_CPIJ006373	Culex pipiens	CpipJ_CPIJ006373	I	0.900
CPIJ006373	Culex quinquefasciatus	CPIJ006373	I	0.900
AALB007752	Anopheles albimanus	AALB007752	I	0.875
CLEC011124	Cimex lectularius	CLEC011124	I	0.875
ACYPI007541	Acyrthosiphon pisum	ACYPI007541	I	0.850
MESCA007078	Megaselia scalaris	MESCA007078	I	0.838
ACEP16400	Atta cephalotes	ACEP16400	I	0.833
AFAF013225	Anopheles farauti	AFAF013225	I	0.825
ADIR002676	Anopheles dirus	ADIR002676	I	0.825
KGM_21065	Danaus plexippus	KGM_21065	I	0.800
HMEL014739	Heliconius melpomene	HMEL014739	I	0.800
SINV13405	Solenopsis invicta	SINV13405	I	0.800
TC006536	Tribolium castaneum	TC006536	I	0.800
PPAI006591	Phlebotomus papatasi	PPAI006591	I	0.792
LCUP002647	Lucilia cuprina	LCUP002647	I	0.767
LCUP002656	Lucilia cuprina	LCUP002656	I	0.762
CpipJ_CPIJ016825	Culex pipiens	CpipJ_CPIJ016825	I	0.756
CPIJ016825	Culex quinquefasciatus	CPIJ016825	I	0.756
EFV53501	Trichinella spiralis	EFV53501	N	0.750
runx2b	Danio rerio	ENSDARG00000059233	I	0.744
ACEP16394	Atta cephalotes	ACEP16394	I	0.738
ENSMGAG00000002035	Meleagris gallopavo	ENSMGAG00000002035	I	0.737
ENSAPLG00000007026	Anas platyrhynchos	ENSAPLG00000007026	I	0.737
CABZ01102124.1	Danio rerio	ENSDARG00000103592	I	0.737
Gfo_R013848	Geospiza fortis	Gfo_R013848	I	0.737
CLEC011126	Cimex lectularius	CLEC011126	N	0.725
Runx2	Mus musculus	ENSMUSG00000039153	D	0.725
BGIBMGA008906	Bombyx mori	BGIBMGA008906	I	0.725
RUNX2	Homo sapiens	ENSG00000124813	D	0.725
ENSLACG00000013776	Latimeria chalumnae	ENSLACG00000013776	I	0.725
ACUA008762	Anopheles culicifacies	ACUA008762	I	0.717
MCINX000297	Melitaea cinxia	MCINX000297	N	0.710
ENSSHAG00000014782	Sarcophilus harrisii	ENSSHAG00000014782	I	0.700
RUNX1	Monodelphis domestica	ENSMODG00000021051	I	0.700
Runx1	Mus musculus	ENSMUSG00000022952	D	0.700
ENSOARG00000013599	Ovis aries	ENSOARG00000013599	I	0.700
RUNX1	Pteropus vampyrus	ENSPVAG00000001606	I	0.700
PHUM333310	Pediculus humanus	PHUM333310	I	0.700

PPAI007797 (Phlebotomus papatasi) Runt

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

41 Related TFs

PPAI007797 **(Phlebotomus papatasi)
Runt**