CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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csin105545
(
Clonorchis sinensis
)
Runt
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00853 (Runt)
IPR013524
csin105545
T319797_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Smp_174320
M02457_2.00
Schistosoma mansoni
NNAACCGCARN
NYTGCGGTTNN
PBM
Weirauch et al.(2014)
pTH8368
0.869
0.869
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
csin105545
Runt
11
140
LKRALREHTTDLIPTTNPHILCTPLPKHWRSNKSLPSQFRVVSLTNIPDGTRVSVTAGNEERPYAELKNPVTIMHANEARFSDLRFLGRSGRGKSFNITITIETTPLILAVYSRAIKVTVDGPRVPRNKY
Links
Other
Runt
family TFs
Other
Clonorchis sinensis
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy