AMTR_s00057p00091350 (Amborella trichopoda)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 AMTR_s00057p00091350 T319885_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RKD2
M07249_2.00
Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN

NDRGAAGHYGAANVGWCDN
Dap-seq
OMalley et al.(2016)
RKD2_col_a
0.730 0.730
RKD2
M07250_2.00
Arabidopsis thaliana
GWCBBTTCRDMTTCC

GGAAKHYGAAVVGWC
Dap-seq
OMalley et al.(2016)
RKD2_colamp_a
0.730 0.730
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN16802 RWP-RK 1 37

Links

Other RWP-RK family TFs
Other Amborella trichopoda TFs

146 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_07483 Aegilops tauschii F775_07483 I 0.838
F775_00225 Aegilops tauschii F775_00225 I 0.757
F775_03178 Aegilops tauschii F775_03178 N 0.757
AMTR_s00021p00218190 Amborella trichopoda AMTR_s00021p00218190 N 0.735
AMTR_s00044p00165760 Amborella trichopoda AMTR_s00044p00165760 N 0.757
Aquca_015_00350 Aquilegia coerulea Aquca_015_00350 N 0.811
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I 0.730
fgenesh1_pm.C_scaffold_8001005 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001005 N 0.757
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I 0.730
fgenesh1_pg.C_scaffold_2000886 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000886 I 0.730
scaffold_103100001.1 Arabidopsis lyrata scaffold_103100001.1 I 0.730
fgenesh1_pg.C_scaffold_8002648 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002648 I 0.730
RKD1 Arabidopsis thaliana AT1G18790 I 0.730
RKD2 Arabidopsis thaliana AT1G74480 D 0.730
RKD5 Arabidopsis thaliana AT4G35590 N 0.784
AT5G16100 Arabidopsis thaliana AT5G16100 N 0.703
RKD4 Arabidopsis thaliana AT5G53040 N 0.757
RKD3 Arabidopsis thaliana AT5G66990 N 0.730
Bostr.0568s0123 Boechera stricta Bostr.0568s0123 N 0.703
Bostr.7867s1419 Boechera stricta Bostr.7867s1419 N 0.703
Bostr.26833s0978 Boechera stricta Bostr.26833s0978 N 0.757
BRADI2G40920 Brachypodium distachyon BRADI2G40920 N 0.784
Bo1g006340 Brassica oleracea Bo1g006340 N 0.784
Bo7g064180 Brassica oleracea Bo7g064180 I 0.730
Bo8g068090 Brassica oleracea Bo8g068090 I 0.730
Bo9g108730 Brassica oleracea Bo9g108730 N 0.730
Bra011626 Brassica rapa Bra011626 N 0.784
Bra008153 Brassica rapa Bra008153 I 0.703
Bra012122 Brassica rapa Bra012122 I 0.730
Bra015907 Brassica rapa Bra015907 I 0.703
Bra016542 Brassica rapa Bra016542 I 0.730
Bra022622 Brassica rapa Bra022622 N 0.757
Cagra.2350s0102 Capsella grandiflora Cagra.2350s0102 N 0.757
Cagra.2007s0003 Capsella grandiflora Cagra.2007s0003 N 0.730
Cagra.4153s0001 Capsella grandiflora Cagra.4153s0001 I 0.703
Cagra.0084s0050 Capsella grandiflora Cagra.0084s0050 N 0.757
Carubv10027579m.g Capsella rubella Carubv10027579m.g N 0.730
Carubv10028317m.g Capsella rubella Carubv10028317m.g N 0.757
Carubv10005148m.g Capsella rubella Carubv10005148m.g N 0.757
Carubv10011133m.g Capsella rubella Carubv10011133m.g I 0.703
evm.TU.supercontig_3.98 Carica papaya evm.TU.supercontig_3.98 N 0.757
Ca_27191 Cicer arietinum Ca_27191 I 0.703
Ca_03992 Cicer arietinum Ca_03992 N 0.703
Ca_13151 Cicer arietinum Ca_13151 I 0.757
Cla014580 Citrullus lanatus Cla014580 N 0.730
Cla019404 Citrullus lanatus Cla019404 I 0.784
Ciclev10027531m.g Citrus clementina Ciclev10027531m.g N 0.784
orange1.1g036926m.g Citrus sinensis orange1.1g036926m.g I 0.730
orange1.1g039420m.g Citrus sinensis orange1.1g039420m.g N 0.784
Cucsa.197700 Cucumis sativus Cucsa.197700 I 0.757
Thhalv10005560m.g Eutrema salsugineum Thhalv10005560m.g N 0.730
Thhalv10015321m.g Eutrema salsugineum Thhalv10015321m.g N 0.730
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I 0.730
Thhalv10027037m.g Eutrema salsugineum Thhalv10027037m.g N 0.784
gene13055-v1.0-hybrid Fragaria vesca gene13055-v1.0-hybrid N 0.784
gene26015-v1.0-hybrid Fragaria vesca gene26015-v1.0-hybrid I 0.757
GLYMA17G10866 Glycine max GLYMA17G10866 I 0.703
GLYMA06G20881 Glycine max GLYMA06G20881 I 0.703
GLYMA04G33516 Glycine max GLYMA04G33516 I 0.730
GLYMA01G36360 Glycine max GLYMA01G36360 N 0.784
GLYMA06G13540 Glycine max GLYMA06G13540 N 0.703
GLYMA11G09080 Glycine max GLYMA11G09080 N 0.784
Gorai.006G266900 Gossypium raimondii Gorai.006G266900 I 0.757
Gorai.003G002500 Gossypium raimondii Gorai.003G002500 N 0.757
Gorai.008G193400 Gossypium raimondii Gorai.008G193400 I 0.757
MLOC_59560 Hordeum vulgare MLOC_59560 I 0.811
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.757
LPERR01G16660 Leersia perrieri LPERR01G16660 N 0.757
LPERR06G07570 Leersia perrieri LPERR06G07570 I 0.838
Lus10005921.g Linum usitatissimum Lus10005921.g N 0.757
Lus10034456.g Linum usitatissimum Lus10034456.g I 0.703
chr2.CM0272.20.nd Lotus japonicus chr2.CM0272.20.nd N 0.811
MDP0000261199 Malus domestica MDP0000261199 I 0.784
MDP0000291622 Malus domestica MDP0000291622 N 0.784
MDP0000266172 Malus domestica MDP0000266172 I 0.784
MDP0000141137 Malus domestica MDP0000141137 N 0.784
cassava34339.m1 Manihot esculenta cassava34339.m1 N 0.757
cassava26650.m1 Manihot esculenta cassava26650.m1 N 0.784
MTR_5g024070 Medicago truncatula MTR_5g024070 N 0.784
mg020279m Mimulus guttatus mg020279m I 0.757
mgf025545m Mimulus guttatus mgf025545m N 0.757
GSMUA_Achr8G13370_001 Musa acuminata GSMUA_Achr8G13370_001 N 0.811
GSMUA_AchrUn_randomG11290_001 Musa acuminata GSMUA_AchrUn_randomG11290_001 N 0.811
OBART01G19230 Oryza barthii OBART01G19230 N 0.757
OB02G39310 Oryza brachyantha OB02G39310 I 0.757
ORGLA06G0077700 Oryza glaberrima ORGLA06G0077700 I 0.865
OGLUM01G22860 Oryza glumaepatula OGLUM01G22860 N 0.784
BGIOSGA001434 Oryza indica BGIOSGA001434 N 0.757
BGIOSGA022580 Oryza indica BGIOSGA022580 I 0.865
OLONG_016325 Oryza longistaminata OLONG_016325 I 0.703
OMERI06G09770 Oryza meridionalis OMERI06G09770 I 0.865
ONIVA06G09450 Oryza nivara ONIVA06G09450 I 0.865
ONIVA01G21910 Oryza nivara ONIVA01G21910 N 0.757
OPUNC01G19590 Oryza punctata OPUNC01G19590 N 0.757
OPUNC02G29870 Oryza punctata OPUNC02G29870 I 0.730
OPUNC06G07940 Oryza punctata OPUNC06G07940 I 0.865
ORUFI01G21630 Oryza rufipogon ORUFI01G21630 N 0.757
ORUFI06G08510 Oryza rufipogon ORUFI06G08510 I 0.865
OS06G0228950 Oryza sativa OS06G0228950 I 0.865
Pavir.Eb01347 Panicum virgatum Pavir.Eb01347 N 0.811
Pavir.J13146 Panicum virgatum Pavir.J13146 I 0.811
Pavir.Da01160 Panicum virgatum Pavir.Da01160 I 0.811
Pavir.Ab02992 Panicum virgatum Pavir.Ab02992 I 0.811
Pavir.Ea01492 Panicum virgatum Pavir.Ea01492 N 0.811
Pavir.Aa00708 Panicum virgatum Pavir.Aa00708 I 0.811
PDK_20s1788591g001 Phoenix dactylifera PDK_20s1788591g001 N 0.784
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.811
fgenesh1_pg.scaffold_823000001 Physcomitrella patens fgenesh1_pg.scaffold_823000001 N 0.919
POPTR_0015s01410 Populus trichocarpa POPTR_0015s01410 N 0.784
POPTR_0005s10400 Populus trichocarpa POPTR_0005s10400 N 0.757
Pm019768 Prunus mume Pm019768 N 0.757
PRUPE_ppa015130mg Prunus persica PRUPE_ppa015130mg N 0.757
30024.m001687 Ricinus communis 30024.m001687 N 0.730
29830.m001444 Ricinus communis 29830.m001444 N 0.784
30138.m004071 Ricinus communis 30138.m004071 I 0.730
SapurV1A.0085s0060 Salix purpurea SapurV1A.0085s0060 N 0.730
SapurV1A.0498s0250 Salix purpurea SapurV1A.0498s0250 N 0.784
SELMODRAFT_73108 Selaginella moellendorffii SELMODRAFT_73108 N 0.811
SELMODRAFT_73109 Selaginella moellendorffii SELMODRAFT_73109 N 0.892
SELMODRAFT_73110 Selaginella moellendorffii SELMODRAFT_73110 N 0.892
SELMODRAFT_73112 Selaginella moellendorffii SELMODRAFT_73112 N 0.811
SELMODRAFT_73117 Selaginella moellendorffii SELMODRAFT_73117 N 0.757
SELMODRAFT_73118 Selaginella moellendorffii SELMODRAFT_73118 N 0.784
SELMODRAFT_73278 Selaginella moellendorffii SELMODRAFT_73278 N 0.784
SELMODRAFT_73111 Selaginella moellendorffii SELMODRAFT_73111 N 0.811
SELMODRAFT_408627 Selaginella moellendorffii SELMODRAFT_408627 N 0.865
Si005102m.g Setaria italica Si005102m.g N 0.784
Si020172m.g Setaria italica Si020172m.g I 0.703
Si019159m.g Setaria italica Si019159m.g N 0.703
Si008273m.g Setaria italica Si008273m.g I 0.811
Solyc03g116010.1 Solanum lycopersicum Solyc03g116010.1 I 0.703
Sb10g008120 Sorghum bicolor Sb10g008120 I 0.811
Sb03g025130 Sorghum bicolor Sb03g025130 N 0.757
Sb04g028040 Sorghum bicolor Sb04g028040 N 0.730
TCM_015430 Theobroma cacao TCM_015430 N 0.703
TCM_014009 Theobroma cacao TCM_014009 I 0.757
TCM_000070 Theobroma cacao TCM_000070 N 0.757
Traes_7DS_405F08A53 Triticum aestivum Traes_7DS_405F08A53 I 0.838
Traes_6DL_8ECBBC867 Triticum aestivum Traes_6DL_8ECBBC867 I 0.757
Traes_6BL_301505440 Triticum aestivum Traes_6BL_301505440 I 0.757
TRIUR3_19503 Triticum urartu TRIUR3_19503 I 0.838
VIT_17s0000g06250 Vitis vinifera VIT_17s0000g06250 I 0.784
VIT_04s0044g00060 Vitis vinifera VIT_04s0044g00060 N 0.730
VIT_16s0098g01730 Vitis vinifera VIT_16s0098g01730 N 0.784
AC207342.3_FG001 Zea mays AC207342.3_FG001 N 0.757
GRMZM2G071322 Zea mays GRMZM2G071322 N 0.757