RKD1 (Arabidopsis thaliana)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 AT1G18790 T319890_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RKD2
M07249_2.00
Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN

NDRGAAGHYGAANVGWCDN
Dap-seq
OMalley et al.(2016)
RKD2_col_a
0.857 0.857
RKD2
M07250_2.00
Arabidopsis thaliana
GWCBBTTCRDMTTCC

GGAAKHYGAAVVGWC
Dap-seq
OMalley et al.(2016)
RKD2_colamp_a
0.857 0.857
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G18790.1 RWP-RK 127 175

Links

Other RWP-RK family TFs
Other Arabidopsis thaliana TFs

82 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK07533.1 Cannabis sativa PK07533.1 I 0.000
ONIVA05G02010 Oryza nivara ONIVA05G02010 I 0.000
PGSC0003DMG400030946 Solanum tuberosum PGSC0003DMG400030946 I 0.000
cassava23775.valid.m1 Manihot esculenta cassava23775.valid.m1 I 0.000
cassava36049.valid.m1 Manihot esculenta cassava36049.valid.m1 I 0.000
mgf018581m Mimulus guttatus mgf018581m I 0.000
Aquca_003_00556 Aquilegia coerulea Aquca_003_00556 I 0.000
Aquca_022_00003 Aquilegia coerulea Aquca_022_00003 I 0.000
evm.TU.supercontig_18.43 Carica papaya evm.TU.supercontig_18.43 I 0.000
evm.TU.supercontig_538.1 Carica papaya evm.TU.supercontig_538.1 I 0.000
gene21832-v1.0-hybrid Fragaria vesca gene21832-v1.0-hybrid I 0.000
Lus10040428.g Linum usitatissimum Lus10040428.g I 0.000
MDP0000205823 Malus domestica MDP0000205823 I 0.000
VIT_03s0038g04450 Vitis vinifera VIT_03s0038g04450 I 0.000
GSMUA_Achr10G12910_001 Musa acuminata GSMUA_Achr10G12910_001 I 0.000
BGIOSGA019118 Oryza indica BGIOSGA019118 I 0.000
GLYMA11G12240 Glycine max GLYMA11G12240 I 0.000
GLYMA12G04440 Glycine max GLYMA12G04440 I 0.000
Gorai.007G122800 Gossypium raimondii Gorai.007G122800 I 0.000
GSMUA_Achr11G05140_001 Musa acuminata GSMUA_Achr11G05140_001 I 0.000
GSMUA_Achr11G20700_001 Musa acuminata GSMUA_Achr11G20700_001 I 0.000
GSMUA_Achr2G06540_001 Musa acuminata GSMUA_Achr2G06540_001 I 0.000
GSMUA_Achr8G29960_001 Musa acuminata GSMUA_Achr8G29960_001 I 0.000
MTR_1g087040 Medicago truncatula MTR_1g087040 I 0.000
Traes_1BS_A44C97E0F Triticum aestivum Traes_1BS_A44C97E0F N 0.000
Pavir.J06041 Panicum virgatum Pavir.J06041 N 0.000
Pavir.Ca00746 Panicum virgatum Pavir.Ca00746 N 0.000
OBART05G02070 Oryza barthii OBART05G02070 N 0.000
BRADI2G38380 Brachypodium distachyon BRADI2G38380 N 0.000
BGIOSGA019116 Oryza indica BGIOSGA019116 N 0.000
OB05G12090 Oryza brachyantha OB05G12090 N 0.000
OPUNC05G01750 Oryza punctata OPUNC05G01750 N 0.000
ORUFI05G02170 Oryza rufipogon ORUFI05G02170 N 0.000
Aquca_024_00067 Aquilegia coerulea Aquca_024_00067 N 0.000
OS05G0129300 Oryza sativa OS05G0129300 N 0.000
Si023562m.g Setaria italica Si023562m.g N 0.000
Traes_1AS_94B6230FB1 Triticum aestivum Traes_1AS_94B6230FB1 N 0.000
MLOC_52125 Hordeum vulgare MLOC_52125 N 0.000
OMERI05G02170 Oryza meridionalis OMERI05G02170 N 0.000
Traes_1DS_62FDD3493 Triticum aestivum Traes_1DS_62FDD3493 N 0.000
OGLUM05G02130 Oryza glumaepatula OGLUM05G02130 N 0.000