CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AT2G43500
(
Arabidopsis thaliana
)
RWP-RK
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02042 (RWP-RK)
IPR003035
AT2G43500
T319896_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NLP7
M07251_2.00
Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW
Dap-seq
OMalley et al.(2016)
NLP7_col_a
0.816
0.816
NLP4
M07248_2.00
Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN
Dap-seq
OMalley et al.(2016)
AtNLP4_col_b
0.755
0.755
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT2G43500.10
RWP-RK
590
638
NVSLSALQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV
AT2G43500.11
RWP-RK
590
638
NVSLSALQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV
AT2G43500.1
RWP-RK
590
638
NVSLSALQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV
AT2G43500.2
RWP-RK
590
651
NVSLSALQQHFSGSLKDAAKSLGGETSAYFQAWVYFFCPTTLKRICRQHGIMRWPSRKINKV
AT2G43500.3
RWP-RK
590
638
NVSLSALQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV
AT2G43500.4
RWP-RK
603
651
NVSLSALQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV
AT2G43500.5
RWP-RK
603
651
NVSLSALQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV
AT2G43500.6
RWP-RK
590
638
NVSLSALQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV
AT2G43500.7
RWP-RK
590
638
NVSLSALQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV
AT2G43500.8
RWP-RK
590
638
NVSLSALQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV
AT2G43500.9
RWP-RK
590
638
NVSLSALQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV
Links
Other
RWP-RK
family TFs
Other
Arabidopsis thaliana
TFs
415 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy