fgenesh1_pg.C_scaffold_2000886 (Arabidopsis lyrata)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 fgenesh1_pg.C_scaffold_2000886 T320034_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RKD2
M07249_2.00
Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN

NDRGAAGHYGAANVGWCDN
Dap-seq
OMalley et al.(2016)
RKD2_col_a
0.714 0.714
RKD2
M07250_2.00
Arabidopsis thaliana
GWCBBTTCRDMTTCC

GGAAKHYGAAVVGWC
Dap-seq
OMalley et al.(2016)
RKD2_colamp_a
0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_2000886 RWP-RK 159 207

Links

Other RWP-RK family TFs
Other Arabidopsis lyrata TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSVPAG00000003263 Vicugna pacos ENSVPAG00000003263 I 0.000
ENSVPAG00000004400 Vicugna pacos ENSVPAG00000004400 I 0.000
e_gw1.17.395.1 Phytophthora capsici e_gw1.17.395.1 N 0.000
F443_04726 Phytophthora parasitica F443_04726 N 0.000
fgenesh-par_contig_48-abinit-gene-0.93 Pythium arrhenomanes fgenesh-par_contig_48-abinit-gene-0.93 N 0.000
fgenesh_scip_prom.46568.4988 Phytophthora kernoviae fgenesh_scip_prom.46568.4988 N 0.000
maker-pag1_scaffold_223-fgenesh-gene-0.6 Pythium aphanidermatum maker-pag1_scaffold_223-fgenesh-gene-0.6 N 0.000
maker-pag1_scaffold_223-snap-gene-0.15 Pythium aphanidermatum maker-pag1_scaffold_223-snap-gene-0.15 N 0.000
maker-pag1_scaffold_73-snap-gene-0.36 Pythium aphanidermatum maker-pag1_scaffold_73-snap-gene-0.36 N 0.000
maker-pir_contig_839-snap-gene-0.7 Pythium irregulare maker-pir_contig_839-snap-gene-0.7 N 0.000
maker-pve_contig_301-fgenesh-gene-0.2 Pythium vexans maker-pve_contig_301-fgenesh-gene-0.2 N 0.000
maker-pve_contig_301-fgenesh-gene-0.3 Pythium vexans maker-pve_contig_301-fgenesh-gene-0.3 N 0.000
Phyra85853 Phytophthora ramorum Phyra85853 N 0.000
Phyra85854 Phytophthora ramorum Phyra85854 N 0.000
Physo128590 Phytophthora sojae Physo128590 N 0.000
PITG_17391 Phytophthora infestans PITG_17391 N 0.000
PYU1_G006823 Pythium ultimum PYU1_G006823 I 0.000