fgenesh1_pg.C_scaffold_2001738 (Arabidopsis lyrata)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 fgenesh1_pg.C_scaffold_2001738 T320035_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RKD2
M07249_2.00
Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN

NDRGAAGHYGAANVGWCDN
Dap-seq
OMalley et al.(2016)
RKD2_col_a
0.939 0.939
RKD2
M07250_2.00
Arabidopsis thaliana
GWCBBTTCRDMTTCC

GGAAKHYGAAVVGWC
Dap-seq
OMalley et al.(2016)
RKD2_colamp_a
0.939 0.939
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_2001738 RWP-RK 134 182

Links

Other RWP-RK family TFs
Other Arabidopsis lyrata TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
20089_YOR028C Saccharomyces mikatae 20089_YOR028C I 0.000
20415_YOR028C Saccharomyces paradoxus 20415_YOR028C I 0.000
AACERI_AaceriAEL222C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAEL222C I 0.000
AGOS_AEL222C Ashbya gossypii AGOS_AEL222C I 0.000
CIN5 Saccharomyces cerevisiae YOR028C D 0.000
Ecym_5580 Eremothecium cymbalariae Ecym_5580 I 0.000
KNAG_0B03190 Kazachstania naganishii KNAG_0B03190 N 0.000
Kwal_19947 Kluyveromyces waltii Kwal_19947 I 0.000
NCAS_0G00800 Naumovozyma castellii NCAS_0G00800 N 0.000
SAKL0G07128g Lachancea kluyveri SAKL0G07128g N 0.000
Scas_Contig699.32 Saccharomyces castellii Scas_Contig699.32 N 0.000
SU7_3200 Saccharomyces arboricola SU7_3200 I 0.000
TBLA_0J00790 Tetrapisispora blattae TBLA_0J00790 I 0.000