Ca_27191 (Cicer arietinum)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Ca_27191 T320913_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.735 0.735
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.735 0.735
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_27191 RWP-RK 73 121

Links

Other RWP-RK family TFs
Other Cicer arietinum TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_3g435550 Medicago truncatula MTR_3g435550 I 0.898
GLYMA04G33516 Glycine max GLYMA04G33516 I 0.878
GLYMA06G20881 Glycine max GLYMA06G20881 I 0.857
Cla019404 Citrullus lanatus Cla019404 I 0.857
evm.TU.supercontig_423.7 Carica papaya evm.TU.supercontig_423.7 I 0.857
Ca_13151 Cicer arietinum Ca_13151 I 0.837
GLYMA05G01030 Glycine max GLYMA05G01030 I 0.816
TCM_014009 Theobroma cacao TCM_014009 I 0.816
VIT_17s0000g06250 Vitis vinifera VIT_17s0000g06250 I 0.816
Solyc03g116010.1 Solanum lycopersicum Solyc03g116010.1 I 0.796
MDP0000261199 Malus domestica MDP0000261199 I 0.796
cassava35166.m1 Manihot esculenta cassava35166.m1 I 0.796
mg020279m Mimulus guttatus mg020279m I 0.796
Pm024905 Prunus mume Pm024905 I 0.796
chr4.CM0087.990.nc Lotus japonicus chr4.CM0087.990.nc I 0.796
PRUPE_ppa023107mg Prunus persica PRUPE_ppa023107mg I 0.796
Gorai.008G193400 Gossypium raimondii Gorai.008G193400 I 0.796
GLYMA17G10866 Glycine max GLYMA17G10866 I 0.796
Cucsa.197700 Cucumis sativus Cucsa.197700 I 0.796
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I 0.776
RKD1 Arabidopsis thaliana AT1G18790 I 0.776
30138.m004071 Ricinus communis 30138.m004071 I 0.776
MDP0000266172 Malus domestica MDP0000266172 I 0.776
Gorai.006G266900 Gossypium raimondii Gorai.006G266900 I 0.755
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I 0.755
Cagra.4153s0001 Capsella grandiflora Cagra.4153s0001 I 0.755
Carubv10011133m.g Capsella rubella Carubv10011133m.g I 0.755
gene26015-v1.0-hybrid Fragaria vesca gene26015-v1.0-hybrid I 0.755
Carubv10021541m.g Capsella rubella Carubv10021541m.g I 0.735
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I 0.735
TRIUR3_19503 Triticum urartu TRIUR3_19503 I 0.735
MLOC_59560 Hordeum vulgare MLOC_59560 I 0.735
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I 0.735
RKD2 Arabidopsis thaliana AT1G74480 D 0.735
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.730
Si020172m.g Setaria italica Si020172m.g I 0.730
Bra008153 Brassica rapa Bra008153 I 0.714
Pavir.J13146 Panicum virgatum Pavir.J13146 I 0.714
Bo8g068090 Brassica oleracea Bo8g068090 I 0.714
Bra015907 Brassica rapa Bra015907 I 0.714
Pavir.Da01160 Panicum virgatum Pavir.Da01160 I 0.714
GRMZM2G392306 Zea mays GRMZM2G392306 I 0.714
Bostr.3288s0094 Boechera stricta Bostr.3288s0094 I 0.714
mgf022310m Mimulus guttatus mgf022310m I 0.714
Si008273m.g Setaria italica Si008273m.g I 0.714
Sb10g008120 Sorghum bicolor Sb10g008120 I 0.714
Bra016542 Brassica rapa Bra016542 I 0.714
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I 0.703