Carubv10027579m.g (Capsella rubella)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Carubv10027579m.g T321100_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10027579m RWP-RK 159 207

Links

Other RWP-RK family TFs
Other Capsella rubella TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.2007s0003 Capsella grandiflora Cagra.2007s0003 N 1.000
fgenesh1_pg.C_scaffold_8002648 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002648 I 0.918
Bostr.0568s0123 Boechera stricta Bostr.0568s0123 N 0.918
fgenesh1_pg.C_scaffold_2000886 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000886 I 0.918
scaffold_103100001.1 Arabidopsis lyrata scaffold_103100001.1 I 0.918
RKD3 Arabidopsis thaliana AT5G66990 N 0.898
Thhalv10005560m.g Eutrema salsugineum Thhalv10005560m.g N 0.857
orange1.1g036926m.g Citrus sinensis orange1.1g036926m.g I 0.778
Bo7g064180 Brassica oleracea Bo7g064180 I 0.776
Bra012122 Brassica rapa Bra012122 I 0.776
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.776
MDP0000266172 Malus domestica MDP0000266172 I 0.755
mgf022310m Mimulus guttatus mgf022310m I 0.755
PRUPE_ppa023107mg Prunus persica PRUPE_ppa023107mg I 0.735
Cagra.4153s0001 Capsella grandiflora Cagra.4153s0001 I 0.735
mg020279m Mimulus guttatus mg020279m I 0.735
Carubv10011133m.g Capsella rubella Carubv10011133m.g I 0.735
Pm024905 Prunus mume Pm024905 I 0.735
gene26015-v1.0-hybrid Fragaria vesca gene26015-v1.0-hybrid I 0.735
MDP0000261199 Malus domestica MDP0000261199 I 0.735
OB06G17750 Oryza brachyantha OB06G17750 I 0.735
Gorai.006G266900 Gossypium raimondii Gorai.006G266900 I 0.735
Gorai.008G193400 Gossypium raimondii Gorai.008G193400 I 0.735
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.730
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I 0.730
Si020172m.g Setaria italica Si020172m.g I 0.730
RKD1 Arabidopsis thaliana AT1G18790 I 0.714
evm.TU.supercontig_423.7 Carica papaya evm.TU.supercontig_423.7 I 0.714
TCM_014009 Theobroma cacao TCM_014009 I 0.714
LPERR06G07570 Leersia perrieri LPERR06G07570 I 0.714
OMERI06G09770 Oryza meridionalis OMERI06G09770 I 0.714
GLYMA06G20881 Glycine max GLYMA06G20881 I 0.714
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I 0.714
BGIOSGA022580 Oryza indica BGIOSGA022580 I 0.714
ONIVA06G09450 Oryza nivara ONIVA06G09450 I 0.714
OPUNC06G07940 Oryza punctata OPUNC06G07940 I 0.714
Solyc03g116010.1 Solanum lycopersicum Solyc03g116010.1 I 0.714
Cla019404 Citrullus lanatus Cla019404 I 0.714
OS06G0228950 Oryza sativa OS06G0228950 I 0.714
ORUFI06G08510 Oryza rufipogon ORUFI06G08510 I 0.714
ORGLA06G0077700 Oryza glaberrima ORGLA06G0077700 I 0.714
cassava35166.m1 Manihot esculenta cassava35166.m1 I 0.714