Pavir.J25840 (Panicum virgatum)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Pavir.J25840 T321237_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NLP4
M07248_2.00
Arabidopsis thaliana
NNHNNBTGCTGYHNN

NNDRCAGCAVNNDNN
Dap-seq
OMalley et al.(2016)
AtNLP4_col_b
0.816 0.816
NLP7
M07251_2.00
Arabidopsis thaliana
WNDTGNCYYTTSRDD

HHYSAARRGNCAHNW
Dap-seq
OMalley et al.(2016)
NLP7_col_a
0.776 0.776
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J25840.1.p RWP-RK 377 425
Pavir.J25840.2.p RWP-RK 356 404
Pavir.J25840.3.p RWP-RK 352 400
Pavir.J25840.4.p RWP-RK 377 425
Pavir.J25840.5.p RWP-RK 356 404

Links

Other RWP-RK family TFs
Other Panicum virgatum TFs

Invalid Input OrderBy

409 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action