MTR_7g100890 (Medicago truncatula)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04689 (S1FA) IPR006779 MTR_7g100890 T321394_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
S1FA3
M07252_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
AT3G09735_col_a
0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES81816 S1FA 432 497

Links

Other S1FA family TFs
Other Medicago truncatula TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.970
MTR_7g100880 Medicago truncatula MTR_7g100880 I 0.924
Ca_12027 Cicer arietinum Ca_12027 I 0.879
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.864
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.864
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.848
Ca_12028 Cicer arietinum Ca_12028 I 0.848
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.833
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.833
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.833
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.818
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.818
mgf000337m Mimulus guttatus mgf000337m I 0.803
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.803
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.803
TCM_022113 Theobroma cacao TCM_022113 I 0.803
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.803
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.803
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.803
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.803
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.803
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.803
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.803
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.788
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.788
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.788
Cla018556 Citrullus lanatus Cla018556 I 0.788
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.773
Cla018106 Citrullus lanatus Cla018106 I 0.773
29805.m001471 Ricinus communis 29805.m001471 I 0.773
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.773
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.773
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.773
S1FA3 Arabidopsis thaliana AT3G09735 D 0.758
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.758
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.758
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.758
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.758
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.758
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.758
mgf004062m Mimulus guttatus mgf004062m I 0.758
Bra029784 Brassica rapa Bra029784 I 0.758
Pm002519 Prunus mume Pm002519 N 0.742
GSMUA_Achr6G23400_001 Musa acuminata GSMUA_Achr6G23400_001 N 0.742
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.742
Bo5g138130 Brassica oleracea Bo5g138130 I 0.742
Bra034084 Brassica rapa Bra034084 I 0.727
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.727
Bo1g144300 Brassica oleracea Bo1g144300 I 0.727
OB04G18770 Oryza brachyantha OB04G18770 I 0.727
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.727
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.727
PK08477.1 Cannabis sativa PK08477.1 I 0.727
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.727
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I 0.727
S1FA1 Arabidopsis thaliana AT3G53370 I 0.727
MDP0000276000 Malus domestica MDP0000276000 N 0.712
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.712
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.712
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.712
S1FA2 Arabidopsis thaliana AT2G37120 I 0.712
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.712
GSMUA_Achr3G17900_001 Musa acuminata GSMUA_Achr3G17900_001 N 0.712
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.712
Bo3g061880 Brassica oleracea Bo3g061880 I 0.712